Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-D8-A1Y0-01A | TCGA-D8-A1Y0 | WDYHV1|CDHR2 | WDYHV1 | CDHR2 | 8 | 5 | 1 | 1 | 32 | 20 | 16 | 0.24 | 124442273 | 175992339 | tier1 | CDS-5UTR | 19824 | NA | 0 |
| BRCA | TCGA-EW-A1PH-01A | TCGA-EW-A1PH | WHSC1L1|ADAM32 | WHSC1L1 | ADAM32 | 8 | 8 | -1 | 1 | 85 | 64 | 59 | 1.8 | 38138985 | 39131831 | tier1 | Out-of-frame | 19838 | validated | 0 |
| BRCA | TCGA-BH-A1ES-01A | TCGA-BH-A1ES | WHSC1L1|CSMD1 | WHSC1L1 | CSMD1 | 8 | 8 | -1 | -1 | 6 | 3 | 2 | 2.3 | 38172165 | 2796266 | tier1 | Out-of-frame | 19841 | NA | 0 |
| BRCA | TCGA-C8-A26X-01A | TCGA-C8-A26X | WHSC1L1|FGFR1 | WHSC1L1 | FGFR1 | 8 | 8 | -1 | -1 | 2 | 4 | 4 | 1.1 | 38162105 | 38285611 | tier2 | In-frame | 19847 | NA | 0 |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | WHSC1L1|FGFR1 | WHSC1L1 | FGFR1 | 8 | 8 | -1 | -1 | 60 | 53 | 47 | 1.1 | 38239317 | 38315052 | tier1 | 5UTR-5UTR | 19848 | NA | 0 |
| BRCA | TCGA-AO-A1KT-01A | TCGA-AO-A1KT | WHSC1L1|GAB2 | WHSC1L1 | GAB2 | 8 | 11 | -1 | -1 | 41 | 48 | 46 | 0.34 | 38239317 | 77991947 | tier1 | 5UTR-CDS | 19850 | NA | 0 |
| BRCA | TCGA-EW-A2FR-01A | TCGA-EW-A2FR | WHSC1L1|NEGR1 | WHSC1L1 | NEGR1 | 8 | 1 | -1 | -1 | 3 | 6 | 6 | 0.32 | 38239317 | 72241980 | tier1 | 5UTR-CDS | 19853 | NA | 0 |
| BRCA | TCGA-C8-A132-01A | TCGA-C8-A132 | WIPF2|IL2RB | WIPF2 | IL2RB | 17 | 22 | 1 | -1 | 457 | 408 | 365 | 0.09 | 38375744 | 37540245 | tier1 | 5UTR-5UTR | 19865 | NA | 0 |
| BRCA | TCGA-AN-A0FV-01A | TCGA-AN-A0FV | WIPF2|SEZ6 | WIPF2 | SEZ6 | 17 | 17 | 1 | -1 | 20 | 8 | 8 | 0.32 | 38375744 | 27309057 | tier1 | 5UTR-CDS | 19873 | NA | 0 |
| BRCA | TCGA-BH-A18T-01A | TCGA-BH-A18T | WNK1|PRMT8 | WNK1 | PRMT8 | 12 | 12 | 1 | 1 | 12 | 13 | 9 | 0.27 | 971436 | 3649772 | tier1 | In-frame | 19891 | NA | 0 |
| BRCA | TCGA-A1-A0SJ-01A | TCGA-A1-A0SJ | WNT11|TSPAN8 | WNT11 | TSPAN8 | 11 | 12 | -1 | -1 | 11 | 14 | 13 | 0.36 | 75917369 | 71551567 | tier4 | CDS-5UTR | 19899 | NA | 0 |
| BRCA | TCGA-AC-A8OQ-01A | TCGA-AC-A8OQ | WNT7B|LRP6 | WNT7B | LRP6 | 22 | 12 | -1 | -1 | 2 | 4 | 3 | 4.9 | 46372564 | 12334373 | tier2 | Out-of-frame | 19903 | NA | 0 |
| BRCA | TCGA-B6-A0I1-01A | TCGA-B6-A0I1 | WRN|ADAM9 | WRN | ADAM9 | 8 | 8 | 1 | 1 | 4 | 4 | 4 | 0.2 | 30982516 | 38871484 | tier1 | In-frame | 19908 | non-validated | 0 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | WSB2|VSIG10 | WSB2 | VSIG10 | 12 | 12 | -1 | -1 | 41 | 24 | 23 | 0.13 | 118490115 | 118520234 | tier1 | Out-of-frame | 19916 | NA | 0 |
| BRCA | TCGA-B6-A0X1-01A | TCGA-B6-A0X1 | WWC1|ODZ2 | WWC1 | ODZ2 | 5 | 5 | 1 | 1 | 6 | 9 | 8 | 0.057 | 167719276 | 167302991 | tier1 | Out-of-frame | 19923 | NA | 0 |
| BRCA | TCGA-E2-A1LG-01A | TCGA-E2-A1LG | WWP1|CPB2 | WWP1 | CPB2 | 8 | 13 | 1 | -1 | 26 | 59 | 54 | 3.5 | 87474075 | 46661955 | tier1 | In-frame | 19931 | non-validated | 0 |
| BRCA | TCGA-E9-A22A-01A | TCGA-E9-A22A | WWP1|NUBPL | WWP1 | NUBPL | 8 | 14 | 1 | 1 | 23 | 12 | 12 | 0.042 | 87393858 | 32295835 | tier1 | In-frame | 19934 | NA | 0 |
| BRCA | TCGA-OL-A5D7-01A | TCGA-OL-A5D7 | XPR1|FAM5C | XPR1 | FAM5C | 1 | 1 | 1 | -1 | 6 | 1 | 1 | 0.25 | 180651547 | 190203607 | tier2 | Out-of-frame | 19973 | NA | 0 |
| BRCA | TCGA-OL-A5D8-01A | TCGA-OL-A5D8 | XPR1|KIFAP3 | XPR1 | KIFAP3 | 1 | 1 | 1 | -1 | 5 | 3 | 3 | 0.36 | 180601406 | 170007572 | tier1 | In-frame | 19974 | NA | 0 |
| BRCA | TCGA-A8-A07W-01A | TCGA-A8-A07W | XPR1|RFWD2 | XPR1 | RFWD2 | 1 | 1 | 1 | -1 | 3 | 1 | 1 | 3.2 | 180843078 | 176153828 | tier3 | In-frame | 19978 | NA | 0 |
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