Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AC-A8OP-01A | TCGA-AC-A8OP | TTLL12|SCUBE1 | TTLL12 | SCUBE1 | 22 | 22 | -1 | -1 | 3 | 1 | 1 | 1.6 | 43572326 | 43634960 | tier3 | Out-of-frame | 18901 | NA | 0 |
| BRCA | TCGA-AR-A1AP-01A | TCGA-AR-A1AP | TTLL5|TSHR | TTLL5 | TSHR | 14 | 14 | 1 | 1 | 15 | 9 | 9 | 2.7 | 76286504 | 81528492 | tier1 | In-frame | 18911 | NA | 0 |
| BRCA | TCGA-A7-A5ZV-01A | TCGA-A7-A5ZV | TUBB6|ROBO1 | TUBB6 | ROBO1 | 18 | 3 | 1 | -1 | 14 | 12 | 8 | 0.58 | 12311052 | 78685258 | tier2 | In-frame | 18931 | NA | 0 |
| BRCA | TCGA-AO-A03T-01A | TCGA-AO-A03T | TUSC3|SORBS3 | TUSC3 | SORBS3 | 8 | 8 | 1 | 1 | 5 | 2 | 2 | 1.6 | 15480758 | 22421500 | tier1 | In-frame | 18970 | NA | 0 |
| BRCA | TCGA-C8-A26V-01A | TCGA-C8-A26V | TXNDC16|GPR137C | TXNDC16 | GPR137C | 14 | 14 | -1 | 1 | 13 | 13 | 4 | 0.63 | 52936755 | 53098878 | tier1 | Out-of-frame | 18987 | NA | 0 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | UBE2D3|SLC9B1 | UBE2D3 | SLC9B1 | 4 | 4 | -1 | -1 | 5 | 8 | 7 | 0.27 | 103789872 | 103912869 | tier1 | CDS-5UTR | 19062 | NA | 0 |
| BRCA | TCGA-LL-A9Q3-01A | TCGA-LL-A9Q3 | UBE2F|RAMP1 | UBE2F | RAMP1 | 2 | 2 | 1 | 1 | 51 | 55 | 51 | 0.22 | 238925275 | 238820170 | tier1 | Out-of-frame | 19068 | NA | 0 |
| BRCA | TCGA-A8-A08J-01A | TCGA-A8-A08J | UBE2G1|SPNS3 | UBE2G1 | SPNS3 | 17 | 17 | -1 | 1 | 50 | 57 | 48 | 3.4 | 4269566 | 4381867 | tier1 | Out-of-frame | 19071 | NA | 0 |
| BRCA | TCGA-AC-A23H-01A | TCGA-AC-A23H | UBE2I|CACNA1H | UBE2I | CACNA1H | 16 | 16 | 1 | 1 | 4 | 9 | 8 | 0.9 | 1359774 | 1267919 | tier1 | 5UTR-CDS | 19078 | NA | 0 |
| BRCA | TCGA-BH-A18T-01A | TCGA-BH-A18T | UBE2J2|GNB1 | UBE2J2 | GNB1 | 1 | 1 | -1 | -1 | 139 | 121 | 104 | 3.2 | 1203242 | 1736020 | tier1 | Out-of-frame | 19082 | NA | 0 |
| BRCA | TCGA-AC-A3EH-01A | TCGA-AC-A3EH | UBE2Q2|NRG4 | UBE2Q2 | NRG4 | 15 | 15 | 1 | -1 | 17 | 13 | 13 | 0.45 | 76183355 | 76235995 | tier1 | Out-of-frame | 19093 | NA | 0 |
| BRCA | TCGA-D8-A27L-01A | TCGA-D8-A27L | UBR5|SSTR5 | UBR5 | SSTR5 | 8 | 16 | -1 | 1 | 7 | 16 | 13 | 0.28 | 103424401 | 1128842 | tier1 | CDS-5UTR | 19154 | NA | 0 |
| BRCA | TCGA-EW-A6SB-01A | TCGA-EW-A6SB | UIMC1|PTPRO | UIMC1 | PTPRO | 5 | 12 | -1 | 1 | 7 | 4 | 4 | 0.04 | 176433540 | 15710389 | tier1 | 5UTR-CDS | 19222 | NA | 0 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | UMODL1|WRB | UMODL1 | WRB | 21 | 21 | 1 | 1 | 2 | 1 | 1 | 3.8 | 43529809 | 40780532 | tier3 | CDS-3UTR | 19234 | NA | 0 |
| BRCA | TCGA-AO-A03V-01A | TCGA-AO-A03V | UNC13B|DNER | UNC13B | DNER | 9 | 2 | 1 | -1 | 28 | 16 | 15 | 0.73 | 35162302 | 230282946 | tier1 | In-frame | 19238 | NA | 0 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | USP15|PKP4 | USP15 | PKP4 | 12 | 2 | 1 | 1 | 5 | 4 | 2 | 0.28 | 62783768 | 159497139 | tier1 | In-frame | 19316 | NA | 0 |
| BRCA | TCGA-A2-A25B-01A | TCGA-A2-A25B | USP21|PVRL4 | USP21 | PVRL4 | 1 | 1 | 1 | -1 | 4 | 2 | 1 | 0.024 | 161134040 | 161042675 | tier3 | In-frame | 19323 | non-validated | 0 |
| BRCA | TCGA-BH-A1FN-01A | TCGA-BH-A1FN | USP42|SLC46A2 | USP42 | SLC46A2 | 7 | 9 | 1 | -1 | 6 | 4 | 2 | 0.13 | 6155154 | 115649693 | tier1 | In-frame | 19390 | NA | 0 |
| BRCA | TCGA-B6-A0I9-01A | TCGA-B6-A0I9 | USP8|C9orf93 | USP8 | C9orf93 | 15 | 9 | 1 | 1 | 4 | 1 | 1 | 0.39 | 50716711 | 15777598 | tier2 | 5UTR-CDS | 19434 | NA | 0 |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | USP8|SLC27A2 | USP8 | SLC27A2 | 15 | 15 | 1 | 1 | 2 | 1 | 1 | 1.7 | 50731374 | 50489697 | tier2 | Out-of-frame | 19435 | NA | 0 |
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