Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A2-A25E-01A | TCGA-A2-A25E | TRAPPC9|SLC45A4 | TRAPPC9 | SLC45A4 | 8 | 8 | -1 | -1 | 2 | 3 | 2 | 0.34 | 141407719 | 142231864 | tier4 | Out-of-frame | 18587 | NA | 0 |
| BRCA | TCGA-E2-A1IO-01A | TCGA-E2-A1IO | TRERF1|TMEM132C | TRERF1 | TMEM132C | 6 | 12 | -1 | 1 | 6 | 1 | 1 | 1.4 | 42418915 | 129100697 | tier2 | 5UTR-5UTR | 18593 | NA | 0 |
| BRCA | TCGA-A8-A09E-01A | TCGA-A8-A09E | TRIM11|SLC2A5 | TRIM11 | SLC2A5 | 1 | 1 | -1 | -1 | 26 | 27 | 26 | 0.033 | 228588665 | 9098565 | tier1 | In-frame | 18608 | NA | 0 |
| BRCA | TCGA-C8-A1HM-01A | TCGA-C8-A1HM | TRIM24|SVOPL | TRIM24 | SVOPL | 7 | 7 | 1 | -1 | 113 | 67 | 62 | 6 | 138258387 | 138281275 | tier1 | Out-of-frame | 18619 | NA | 0 |
| BRCA | TCGA-BH-A0C7-01B | TCGA-BH-A0C7 | TRIP12|SLC4A10 | TRIP12 | SLC4A10 | 2 | 2 | -1 | 1 | 57 | 23 | 17 | 0.38 | 230701564 | 162820645 | tier1 | Out-of-frame | 18691 | NA | 0 |
| BRCA | TCGA-A2-A0SW-01A | TCGA-A2-A0SW | TRPC4AP|C9orf5 | TRPC4AP | C9orf5 | 20 | 9 | -1 | -1 | 3 | 1 | 1 | 3.2 | 33642779 | 111835718 | tier2 | In-frame | 18718 | NA | 0 |
| BRCA | TCGA-AC-A3W5-01A | TCGA-AC-A3W5 | TRPM4|PPFIA3 | TRPM4 | PPFIA3 | 19 | 19 | 1 | 1 | 27 | 19 | 19 | 0.056 | 49675365 | 49636258 | tier1 | Out-of-frame | 18726 | NA | 0 |
| BRCA | TCGA-C8-A1HI-01A | TCGA-C8-A1HI | TRPM7|TMEM104 | TRPM7 | TMEM104 | 15 | 17 | -1 | 1 | 21 | 13 | 10 | 1.8 | 50949978 | 72832066 | tier1 | Out-of-frame | 18735 | NA | 0 |
| BRCA | TCGA-LL-A5YO-01A | TCGA-LL-A5YO | TRPV6|KEL | TRPV6 | KEL | 7 | 7 | -1 | -1 | 42 | 21 | 16 | 0.084 | 142583134 | 142640970 | tier1 | Out-of-frame | 18742 | NA | 0 |
| BRCA | TCGA-AR-A256-01A | TCGA-AR-A256 | TSC2|TMEM204 | TSC2 | TMEM204 | 16 | 16 | 1 | 1 | 12 | 15 | 13 | 0.059 | 2098754 | 1604783 | tier1 | Out-of-frame | 18750 | non-validated | 0 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | TSPAN14|DYDC2 | TSPAN14 | DYDC2 | 10 | 10 | 1 | 1 | 13 | 6 | 6 | 0.46 | 82249070 | 82122191 | tier1 | CDS-5UTR | 18788 | NA | 0 |
| BRCA | TCGA-D8-A1XK-01A | TCGA-D8-A1XK | TSPAN14|SFTPD | TSPAN14 | SFTPD | 10 | 10 | 1 | -1 | 38 | 23 | 22 | 0.021 | 82228443 | 81702635 | tier1 | 5UTR-CDS | 18790 | NA | 0 |
| BRCA | TCGA-E9-A244-01A | TCGA-E9-A244 | TSPAN15|SAMD8 | TSPAN15 | SAMD8 | 10 | 10 | 1 | 1 | 6 | 6 | 5 | 0.12 | 71211446 | 76924403 | tier1 | Out-of-frame | 18792 | NA | 0 |
| BRCA | TCGA-E2-A15S-01A | TCGA-E2-A15S | TSPAN15|VPS26A | TSPAN15 | VPS26A | 10 | 10 | 1 | 1 | 2 | 9 | 9 | 2.4 | 71211446 | 70915568 | tier3 | In-frame | 18793 | NA | 0 |
| BRCA | TCGA-AC-A2FE-01A | TCGA-AC-A2FE | TSPAN3|CFB | TSPAN3 | CFB | 15 | 6 | -1 | 1 | 2 | 5 | 1 | 1.9 | 77338372 | 31913427 | tier3 | NA | 18796 | NA | 0 |
| BRCA | TCGA-E9-A243-01A | TCGA-E9-A243 | TSPAN5|PKD2 | TSPAN5 | PKD2 | 4 | 4 | -1 | 1 | 5 | 1 | 1 | 0.05 | 99579297 | 88973143 | tier4 | In-frame | 18803 | NA | 0 |
| BRCA | TCGA-AO-A03V-01A | TCGA-AO-A03V | TSPAN9|CACNA1C | TSPAN9 | CACNA1C | 12 | 12 | 1 | 1 | 8 | 7 | 6 | 0.57 | 3310422 | 2773991 | tier1 | Out-of-frame | 18809 | NA | 0 |
| BRCA | TCGA-A8-A09T-01A | TCGA-A8-A09T | TSPAN9|PRH1 | TSPAN9 | PRH1 | 12 | 12 | 1 | -1 | 12 | 2 | 2 | 0.32 | 3192885 | 11035695 | tier1 | 5UTR-CDS | 18814 | NA | 0 |
| BRCA | TCGA-A8-A09T-01A | TCGA-A8-A09T | TSPAN9|PRR4 | TSPAN9 | PRR4 | 12 | 12 | 1 | -1 | 6 | 9 | 9 | 1 | 3192885 | 11001006 | tier1 | 5UTR-CDS | 18815 | NA | 0 |
| BRCA | TCGA-C8-A12W-01A | TCGA-C8-A12W | TTC33|ADAM19 | TTC33 | ADAM19 | 5 | 5 | -1 | -1 | 5 | 1 | 1 | 0.049 | 40746900 | 156964999 | tier2 | In-frame | 18849 | NA | 0 |
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