Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A7-A13D-01B | TCGA-A7-A13D | TMEM123|MMP27 | TMEM123 | MMP27 | 11 | 11 | -1 | -1 | 4 | 23 | 16 | 0.02 | 102319543 | 102563772 | tier1 | Out-of-frame | 17953 | validated | 0 |
| BRCA | TCGA-EW-A1PC-01B | TCGA-EW-A1PC | TMEM131|TGFBRAP1 | TMEM131 | TGFBRAP1 | 2 | 2 | -1 | -1 | 4 | 1 | 1 | 0.12 | 98475767 | 105897180 | tier2 | Out-of-frame | 17960 | validated | 0 |
| BRCA | TCGA-BH-A0B7-01A | TCGA-BH-A0B7 | TMEM132E|GPATCH8 | TMEM132E | GPATCH8 | 17 | 17 | 1 | -1 | 9 | 6 | 5 | 0.29 | 32908162 | 42501860 | tier1 | Out-of-frame | 17965 | NA | 0 |
| BRCA | TCGA-A8-A06Z-01A | TCGA-A8-A06Z | TMEM135|CLMP | TMEM135 | CLMP | 11 | 11 | 1 | -1 | 26 | 18 | 16 | 4.4 | 86802437 | 122955421 | tier1 | In-frame | 17971 | NA | 0 |
| BRCA | TCGA-A8-A08R-01A | TCGA-A8-A08R | TMEM181|HMGCLL1 | TMEM181 | HMGCLL1 | 6 | 6 | 1 | -1 | 13 | 20 | 17 | 0.49 | 159029782 | 55304357 | tier1 | Out-of-frame | 17994 | NA | 0 |
| BRCA | TCGA-A8-A07C-01A | TCGA-A8-A07C | TMEM182|SLC9A2 | TMEM182 | SLC9A2 | 2 | 2 | 1 | 1 | 11 | 5 | 4 | 0.2 | 103380886 | 103274023 | tier1 | In-frame | 17998 | NA | 0 |
| BRCA | TCGA-A7-A5ZV-01A | TCGA-A7-A5ZV | TMEM184B|RNF25 | TMEM184B | RNF25 | 22 | 2 | -1 | -1 | 2 | 1 | 1 | 0.07 | 38626675 | 219533402 | tier4 | Out-of-frame | 18002 | NA | 0 |
| BRCA | TCGA-D8-A13Z-01A | TCGA-D8-A13Z | TMEM206|RCOR3 | TMEM206 | RCOR3 | 1 | 1 | -1 | 1 | 7 | 5 | 5 | 0.37 | 212583767 | 211486766 | tier1 | Out-of-frame | 18009 | NA | 0 |
| BRCA | TCGA-AN-A0XU-01A | TCGA-AN-A0XU | TMEM25|CDH26 | TMEM25 | CDH26 | 11 | 20 | 1 | 1 | 4 | 1 | 1 | 0.085 | 118405070 | 58567433 | tier4 | Out-of-frame | 18016 | NA | 0 |
| BRCA | TCGA-A2-A0CZ-01A | TCGA-A2-A0CZ | TMEM64|NECAB1 | TMEM64 | NECAB1 | 8 | 8 | -1 | 1 | 3 | 3 | 3 | 0.27 | 91657339 | 91813919 | tier1 | In-frame | 18047 | NA | 0 |
| BRCA | TCGA-A2-A0D0-01A | TCGA-A2-A0D0 | TMEM87B|MERTK | TMEM87B | MERTK | 2 | 2 | 1 | 1 | 13 | 14 | 12 | 0.21 | 112813333 | 112751828 | tier1 | In-frame | 18058 | validated | 0 |
| BRCA | TCGA-AO-A0J2-01A | TCGA-AO-A0J2 | TMEM87B|MERTK | TMEM87B | MERTK | 2 | 2 | 1 | 1 | 6 | 4 | 4 | 0.21 | 112813333 | 112785928 | tier1 | Out-of-frame | 18059 | validated | 0 |
| BRCA | TCGA-C8-A132-01A | TCGA-C8-A132 | TMPRSS6|EME1 | TMPRSS6 | EME1 | 22 | 17 | -1 | 1 | 14 | 15 | 14 | 0.27 | 37485618 | 48455956 | tier1 | Out-of-frame | 18287 | NA | 0 |
| BRCA | TCGA-B6-A0X1-01A | TCGA-B6-A0X1 | TNFRSF11A|KIAA1468 | TNFRSF11A | KIAA1468 | 18 | 18 | 1 | 1 | 3 | 1 | 1 | 3.1 | 60036717 | 59954584 | tier2 | In-frame | 18337 | NA | 0 |
| BRCA | TCGA-C8-A12P-01A | TCGA-C8-A12P | TOMM34|ERC1 | TOMM34 | ERC1 | 20 | 12 | -1 | 1 | 4 | 3 | 3 | 0.2 | 43580474 | 1553728 | tier1 | Out-of-frame | 18435 | NA | 0 |
| BRCA | TCGA-AO-A129-01A | TCGA-AO-A129 | TOMM40|PVRL2 | TOMM40 | PVRL2 | 19 | 19 | 1 | 1 | 2 | 4 | 4 | 0.18 | 45394946 | 45375110 | tier3 | In-frame | 18437 | NA | 0 |
| BRCA | TCGA-AR-A24K-01A | TCGA-AR-A24K | TOX3|ITFG1 | TOX3 | ITFG1 | 16 | 16 | -1 | -1 | 27 | 12 | 10 | 1.3 | 52479906 | 47196575 | tier2 | Out-of-frame | 18463 | NA | 0 |
| BRCA | TCGA-AO-A03L-01A | TCGA-AO-A03L | TPRG1|DGKG | TPRG1 | DGKG | 3 | 3 | 1 | -1 | 3 | 7 | 7 | 0.33 | 188933172 | 185983095 | tier1 | Out-of-frame | 18496 | validated | 0 |
| BRCA | TCGA-B6-A0I9-01A | TCGA-B6-A0I9 | TRADD|SLC12A1 | TRADD | SLC12A1 | 16 | 15 | -1 | 1 | 23 | 102 | 97 | 0.24 | 67193741 | 48548008 | tier1 | 5UTR-CDS | 18541 | NA | 0 |
| BRCA | TCGA-AR-A0U4-01A | TCGA-AR-A0U4 | TRAPPC9|LIMA1 | TRAPPC9 | LIMA1 | 8 | 12 | -1 | -1 | 3 | 2 | 2 | 0.62 | 140998934 | 50625493 | tier1 | In-frame | 18583 | NA | 0 |
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