Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-LL-A5YN-01A | TCGA-LL-A5YN | TGOLN2|FOXP1 | TGOLN2 | FOXP1 | 2 | 3 | -1 | -1 | 2 | 6 | 4 | 0.47 | 85545150 | 71007472 | tier3 | NA | 17751 | NA | 0 |
| BRCA | TCGA-C8-A3M8-01A | TCGA-C8-A3M8 | THEM4|DCST2 | THEM4 | DCST2 | 1 | 1 | -1 | -1 | 12 | 19 | 14 | 2.5 | 151881836 | 154999191 | tier1 | Out-of-frame | 17768 | NA | 0 |
| BRCA | TCGA-A7-A26J-01A | TCGA-A7-A26J | THRAP3|EPHB2 | THRAP3 | EPHB2 | 1 | 1 | 1 | 1 | 25 | 24 | 23 | 2.6 | 36725085 | 23107914 | tier1 | 5UTR-CDS | 17786 | non-validated | 0 |
| BRCA | TCGA-AR-A256-01A | TCGA-AR-A256 | TIA1|TGFA | TIA1 | TGFA | 2 | 2 | -1 | -1 | 38 | 42 | 38 | 0.73 | 70475537 | 70692865 | tier1 | Out-of-frame | 17815 | validated | 0 |
| BRCA | TCGA-AC-A3OD-01B | TCGA-AC-A3OD | TIAM1|FBLIM1 | TIAM1 | FBLIM1 | 21 | 1 | -1 | 1 | 5 | 2 | 1 | 0.27 | 32711558 | 16111043 | tier2 | 5UTR-CDS | 17818 | NA | 0 |
| BRCA | TCGA-E9-A248-01A | TCGA-E9-A248 | TIAM1|NRIP1 | TIAM1 | NRIP1 | 21 | 21 | -1 | -1 | 6 | 5 | 5 | 0.16 | 32638326 | 16340847 | tier4 | CDS-5UTR | 17820 | NA | 0 |
| BRCA | TCGA-BH-A0HY-01A | TCGA-BH-A0HY | TICAM1|PTPRS | TICAM1 | PTPRS | 19 | 19 | -1 | -1 | 6 | 2 | 2 | 0.2 | 4831626 | 5265207 | tier1 | 5UTR-CDS | 17824 | NA | 0 |
| BRCA | TCGA-A2-A0EW-01A | TCGA-A2-A0EW | TJP2|TMEM38B | TJP2 | TMEM38B | 9 | 9 | 1 | 1 | 24 | 12 | 12 | 0.65 | 71845148 | 108536146 | tier1 | In-frame | 17846 | NA | 0 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | TJP3|ZNF554 | TJP3 | ZNF554 | 19 | 19 | 1 | 1 | 2 | 2 | 2 | 0.41 | 3740761 | 2832301 | tier2 | In-frame | 17848 | non-validated | 0 |
| BRCA | TCGA-B6-A0RE-01A | TCGA-B6-A0RE | TM2D2|ADAM9 | TM2D2 | ADAM9 | 8 | 8 | -1 | 1 | 6 | 9 | 9 | 0.13 | 38853732 | 38865405 | tier1 | Out-of-frame | 17862 | non-validated | 0 |
| BRCA | TCGA-AN-A0FX-01A | TCGA-AN-A0FX | TM9SF3|PIK3AP1 | TM9SF3 | PIK3AP1 | 10 | 10 | -1 | -1 | 7 | 126 | 124 | 1.1 | 98346491 | 98376468 | tier1 | In-frame | 17872 | NA | 0 |
| BRCA | TCGA-A7-A6VV-01A | TCGA-A7-A6VV | TM9SF3|SLIT1 | TM9SF3 | SLIT1 | 10 | 10 | -1 | -1 | 23 | 37 | 36 | 0.5 | 98346491 | 98808875 | tier1 | Out-of-frame | 17874 | NA | 0 |
| BRCA | TCGA-E2-A1LK-01A | TCGA-E2-A1LK | TM9SF4|TPX2 | TM9SF4 | TPX2 | 20 | 20 | 1 | 1 | 2 | 4 | 3 | 0.52 | 30697842 | 30354359 | tier4 | 5UTR-CDS | 17880 | non-validated | 0 |
| BRCA | TCGA-C8-A130-01A | TCGA-C8-A130 | TMCO3|KATNAL2 | TMCO3 | KATNAL2 | 13 | 18 | 1 | 1 | 9 | 4 | 4 | 1.1 | 114193822 | 44572828 | tier1 | Out-of-frame | 17904 | non-validated | 0 |
| BRCA | TCGA-AR-A1AQ-01A | TCGA-AR-A1AQ | TMCO4|PLA2G2A | TMCO4 | PLA2G2A | 1 | 1 | -1 | -1 | 2 | 2 | 1 | 0.35 | 20027261 | 20305372 | tier3 | CDS-5UTR | 17909 | NA | 0 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | TMCO7|CDH1 | TMCO7 | CDH1 | 16 | 16 | 1 | 1 | 10 | 6 | 6 | 2.9 | 68901123 | 68855904 | tier1 | In-frame | 17911 | validated | 0 |
| BRCA | TCGA-EW-A1PA-01A | TCGA-EW-A1PA | TMEM104|DNAI2 | TMEM104 | DNAI2 | 17 | 17 | 1 | 1 | 48 | 63 | 52 | 1.5 | 72791771 | 72310260 | tier1 | Out-of-frame | 17922 | NA | 0 |
| BRCA | TCGA-E2-A14T-01A | TCGA-E2-A14T | TMEM117|ZCRB1 | TMEM117 | ZCRB1 | 12 | 12 | 1 | -1 | 18 | 24 | 24 | 0.62 | 44238731 | 42717906 | tier1 | CDS-5UTR | 17942 | NA | 0 |
| BRCA | TCGA-AO-A0JD-01A | TCGA-AO-A0JD | TMEM123|CNTN5 | TMEM123 | CNTN5 | 11 | 11 | -1 | 1 | 6 | 38 | 36 | 0.019 | 102272270 | 99426876 | tier1 | CDS-5UTR | 17947 | NA | 0 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | TMEM123|MMP20 | TMEM123 | MMP20 | 11 | 11 | -1 | -1 | 8 | 2 | 2 | 0.87 | 102319543 | 102480761 | tier1 | In-frame | 17952 | NA | 0 |
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