Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | TAF4|B4GALT5 | TAF4 | B4GALT5 | 20 | 20 | -1 | -1 | 3 | 2 | 2 | 0.78 | 60575180 | 48273239 | tier1 | Out-of-frame | 17333 | NA | 0 |
| BRCA | TCGA-A7-A13F-01A | TCGA-A7-A13F | TAF4|CDH4 | TAF4 | CDH4 | 20 | 20 | -1 | 1 | 6 | 2 | 2 | 0.55 | 60639507 | 59829882 | tier1 | Out-of-frame | 17334 | NA | 0 |
| BRCA | TCGA-D8-A1XK-01A | TCGA-D8-A1XK | TANC1|PKP4 | TANC1 | PKP4 | 2 | 2 | 1 | 1 | 50 | 50 | 49 | 1.5 | 159954346 | 159459582 | tier1 | Out-of-frame | 17365 | NA | 0 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | TBCD|SLC9A3R1 | TBCD | SLC9A3R1 | 17 | 17 | 1 | 1 | 84 | 49 | 44 | 3.8 | 80847573 | 72758151 | tier1 | In-frame | 17522 | non-validated | 0 |
| BRCA | TCGA-D8-A27V-01A | TCGA-D8-A27V | TBL1XR1|CACNA1C | TBL1XR1 | CACNA1C | 3 | 12 | -1 | 1 | 36 | 35 | 30 | 0.025 | 176816254 | 2721069 | tier1 | 5UTR-CDS | 17545 | NA | 0 |
| BRCA | TCGA-A2-A3Y0-01A | TCGA-A2-A3Y0 | TCF12|FAM70B | TCF12 | FAM70B | 15 | 13 | 1 | 1 | 3 | 11 | 10 | 2.7 | 57555472 | 114469088 | tier1 | Out-of-frame | 17581 | non-validated | 0 |
| BRCA | TCGA-GI-A2C9-01A | TCGA-GI-A2C9 | TCF12|MGST2 | TCF12 | MGST2 | 15 | 4 | 1 | 1 | 10 | 7 | 7 | 0.17 | 57213296 | 140599697 | tier1 | In-frame | 17582 | non-validated | 0 |
| BRCA | TCGA-BH-A1FE-06A | TCGA-BH-A1FE | TCTN3|DHCR24 | TCTN3 | DHCR24 | 10 | 1 | -1 | -1 | 2 | 5 | 3 | 0.41 | 97442408 | 55316918 | tier4 | NA | 17617 | NA | 0 |
| BRCA | TCGA-AO-A1KQ-01A | TCGA-AO-A1KQ | TDG|STAB2 | TDG | STAB2 | 12 | 12 | 1 | 1 | 6 | 8 | 6 | 3.3 | 104359838 | 104155078 | tier1 | Out-of-frame | 17619 | NA | 0 |
| BRCA | TCGA-B6-A0RT-01A | TCGA-B6-A0RT | TEAD1|CAP2 | TEAD1 | CAP2 | 11 | 6 | 1 | 1 | 14 | 4 | 4 | 0.026 | 12697108 | 17463227 | tier1 | 5UTR-CDS | 17626 | non-validated | 0 |
| BRCA | TCGA-GM-A2DH-01A | TCGA-GM-A2DH | TEC|PASD1 | TEC | PASD1 | 4 | X | -1 | 1 | 6 | 4 | 4 | 1.4 | 48271769 | 150789402 | tier2 | 5UTR-CDS | 17646 | NA | 0 |
| BRCA | TCGA-C8-A12V-01A | TCGA-C8-A12V | TENC1|ACVR1B | TENC1 | ACVR1B | 12 | 12 | 1 | 1 | 4 | 7 | 7 | 0.23 | 53445747 | 52378976 | tier1 | 5UTR-CDS | 17656 | NA | 0 |
| BRCA | TCGA-AO-A124-01A | TCGA-AO-A124 | TESK2|GPR37L1 | TESK2 | GPR37L1 | 1 | 1 | -1 | 1 | 16 | 7 | 6 | 0.27 | 45923236 | 202096869 | tier1 | In-frame | 17664 | non-validated | 0 |
| BRCA | TCGA-A8-A07I-01A | TCGA-A8-A07I | TEX14|SDK2 | TEX14 | SDK2 | 17 | 17 | -1 | -1 | 3 | 1 | 1 | 0.54 | 56661861 | 71387677 | tier2 | Out-of-frame | 17681 | validated | 0 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | TEX2|TTYH2 | TEX2 | TTYH2 | 17 | 17 | -1 | 1 | 10 | 3 | 2 | 0.66 | 62270919 | 72239513 | tier1 | Out-of-frame | 17688 | NA | 0 |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | TFDP1|TMCO3 | TFDP1 | TMCO3 | 13 | 13 | 1 | 1 | 41 | 101 | 98 | 0.89 | 114277601 | 114164553 | tier1 | In-frame | 17701 | non-validated | 0 |
| BRCA | TCGA-A2-A25F-01A | TCGA-A2-A25F | TFDP2|LANCL2 | TFDP2 | LANCL2 | 3 | 7 | -1 | 1 | 21 | 8 | 7 | 0.13 | 141811903 | 55466116 | tier1 | In-frame | 17704 | NA | 0 |
| BRCA | TCGA-EW-A1P4-01A | TCGA-EW-A1P4 | TFDP2|PLD1 | TFDP2 | PLD1 | 3 | 3 | -1 | -1 | 5 | 13 | 12 | 2.1 | 141747421 | 171455872 | tier1 | 5UTR-5UTR | 17705 | NA | 0 |
| BRCA | TCGA-GI-A2C9-01A | TCGA-GI-A2C9 | TGFBR3|ANKS1A | TGFBR3 | ANKS1A | 1 | 6 | -1 | 1 | 3 | 5 | 4 | 0.42 | 92200333 | 35085023 | tier1 | NA | 17742 | non-validated | 0 |
| BRCA | TCGA-A7-A4SA-01A | TCGA-A7-A4SA | TGFBR3|EDARADD | TGFBR3 | EDARADD | 1 | 1 | -1 | 1 | 3 | 4 | 3 | 2.3 | 92327028 | 236572516 | tier1 | In-frame | 17743 | NA | 0 |
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