Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A0H7-01A | TCGA-BH-A0H7 | STIM1|HOMEZ | STIM1 | HOMEZ | 11 | 14 | 1 | -1 | 14 | 8 | 2 | 0.54 | 4045217 | 23746396 | tier1 | In-frame | 17037 | NA | 0 |
| BRCA | TCGA-E2-A14Z-01A | TCGA-E2-A14Z | STK39|ITGB6 | STK39 | ITGB6 | 2 | 2 | -1 | -1 | 2 | 4 | 4 | 0.18 | 168921829 | 160994710 | tier2 | In-frame | 17087 | NA | 0 |
| BRCA | TCGA-AR-A1AP-01A | TCGA-AR-A1AP | STOM|DDX27 | STOM | DDX27 | 9 | 20 | -1 | 1 | 2 | 4 | 1 | 0.99 | 124101355 | 47849303 | tier4 | NA | 17095 | NA | 0 |
| BRCA | TCGA-BH-A1FE-01A | TCGA-BH-A1FE | STON2|TJP2 | STON2 | TJP2 | 14 | 9 | -1 | 1 | 2 | 3 | 3 | 0.71 | 81893446 | 71827464 | tier2 | 5UTR-5UTR | 17097 | NA | 0 |
| BRCA | TCGA-A2-A0ST-01A | TCGA-A2-A0ST | STX6|RP11-111M22.2 | STX6 | RP11-111M22.2 | 1 | 11 | -1 | 1 | 2 | 2 | 2 | 0.022 | 180953813 | 76114704 | tier3 | In-frame | 17138 | NA | 0 |
| BRCA | TCGA-D8-A27V-01A | TCGA-D8-A27V | SUCLA2|CASR | SUCLA2 | CASR | 13 | 3 | -1 | 1 | 2 | 1 | 1 | 0.39 | 48611742 | 121972795 | tier2 | 5UTR-5UTR | 17159 | NA | 0 |
| BRCA | TCGA-AC-A7VC-01A | TCGA-AC-A7VC | SULF1|C8orf34 | SULF1 | C8orf34 | 8 | 8 | 1 | 1 | 2 | 4 | 3 | 2.6 | 70379185 | 69728121 | tier4 | 5UTR-CDS | 17174 | NA | 0 |
| BRCA | TCGA-BH-A0HL-01A | TCGA-BH-A0HL | SULF2|GAB2 | SULF2 | GAB2 | 20 | 11 | -1 | -1 | 54 | 32 | 30 | 1.1 | 46385933 | 77991947 | tier1 | Out-of-frame | 17177 | NA | 0 |
| BRCA | TCGA-D8-A1XA-01A | TCGA-D8-A1XA | SUSD1|UGCG | SUSD1 | UGCG | 9 | 9 | -1 | 1 | 65 | 26 | 21 | 1.6 | 114840818 | 114676885 | tier1 | Out-of-frame | 17200 | NA | 0 |
| BRCA | TCGA-AO-A12D-01A | TCGA-AO-A12D | SUSD4|NVL | SUSD4 | NVL | 1 | 1 | -1 | -1 | 15 | 8 | 7 | 4.7 | 223536620 | 224468887 | tier1 | Out-of-frame | 17202 | NA | 0 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | SUSD4|RYR2 | SUSD4 | RYR2 | 1 | 1 | -1 | 1 | 14 | 14 | 13 | 0.048 | 223536620 | 237664011 | tier1 | In-frame | 17203 | NA | 0 |
| BRCA | TCGA-C8-A1HJ-01A | TCGA-C8-A1HJ | SYNE1|CACNA1C | SYNE1 | CACNA1C | 6 | 12 | -1 | 1 | 2 | 5 | 5 | 0.3 | 152614723 | 2778099 | tier2 | In-frame | 17239 | NA | 0 |
| BRCA | TCGA-C8-A26Z-01A | TCGA-C8-A26Z | SYNE2|CATSPERB | SYNE2 | CATSPERB | 14 | 14 | 1 | -1 | 2 | 1 | 1 | 0.23 | 64434564 | 92105594 | tier3 | Out-of-frame | 17244 | NA | 0 |
| BRCA | TCGA-A8-A08Z-01A | TCGA-A8-A08Z | SYNE2|DMRTA1 | SYNE2 | DMRTA1 | 14 | 9 | 1 | 1 | 2 | 6 | 6 | 0.15 | 64634357 | 22451063 | tier2 | Out-of-frame | 17245 | NA | 0 |
| BRCA | TCGA-A8-A079-01A | TCGA-A8-A079 | SYNE2|KIAA0391 | SYNE2 | KIAA0391 | 14 | 14 | 1 | 1 | 293 | 121 | 117 | 0.58 | 64453335 | 35735933 | tier1 | In-frame | 17248 | NA | 0 |
| BRCA | TCGA-A7-A6VV-01A | TCGA-A7-A6VV | SYNE2|RTN1 | SYNE2 | RTN1 | 14 | 14 | 1 | -1 | 4 | 5 | 4 | 2.7 | 64434564 | 60213199 | tier1 | Out-of-frame | 17249 | NA | 0 |
| BRCA | TCGA-BH-A0BZ-01A | TCGA-BH-A0BZ | SYNRG|CCR7 | SYNRG | CCR7 | 17 | 17 | -1 | -1 | 9 | 4 | 3 | 0.63 | 35921297 | 38715194 | tier1 | In-frame | 17260 | NA | 0 |
| BRCA | TCGA-BH-A201-01A | TCGA-BH-A201 | SYTL2|CHRM1 | SYTL2 | CHRM1 | 11 | 11 | -1 | -1 | 250 | 124 | 119 | 2.3 | 85411558 | 62678650 | tier1 | CDS-5UTR | 17281 | NA | 0 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | SYTL2|TMEM135 | SYTL2 | TMEM135 | 11 | 11 | -1 | 1 | 49 | 47 | 41 | 0.88 | 85468668 | 87006824 | tier1 | In-frame | 17283 | NA | 0 |
| BRCA | TCGA-B6-A0IJ-01A | TCGA-B6-A0IJ | TAB3|DMD | TAB3 | DMD | X | X | -1 | -1 | 11 | 7 | 7 | 0.075 | 30877604 | 31241238 | tier1 | Out-of-frame | 17292 | validated | 0 |
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