Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-PE-A5DE-01A | TCGA-PE-A5DE | SNAP29|IGLL1 | SNAP29 | IGLL1 | 22 | 22 | 1 | -1 | 88 | 91 | 81 | 1.7 | 21224821 | 23917269 | tier1 | In-frame | 16479 | NA | 0 |
| BRCA | TCGA-A1-A0SN-01A | TCGA-A1-A0SN | SND1|GRM8 | SND1 | GRM8 | 7 | 7 | 1 | -1 | 6 | 7 | 7 | 1.8 | 127361454 | 126544737 | tier1 | Out-of-frame | 16492 | NA | 0 |
| BRCA | TCGA-A8-A09X-01A | TCGA-A8-A09X | SNX9|DAP | SNX9 | DAP | 6 | 5 | 1 | -1 | 10 | 22 | 22 | 0.1 | 158323077 | 10683683 | tier1 | In-frame | 16567 | validated | 0 |
| BRCA | TCGA-D8-A147-01A | TCGA-D8-A147 | SOBP|ABCA9 | SOBP | ABCA9 | 6 | 17 | 1 | -1 | 9 | 6 | 4 | 100 | 107854814 | 67008224 | tier1 | In-frame | 16571 | NA | 0 |
| BRCA | TCGA-AR-A2LL-01A | TCGA-AR-A2LL | SORL1|DDX6 | SORL1 | DDX6 | 11 | 11 | 1 | -1 | 2 | 3 | 2 | 1.8 | 121403261 | 118657227 | tier2 | CDS-5UTR | 16599 | NA | 0 |
| BRCA | TCGA-E9-A22G-01A | TCGA-E9-A22G | SORL1|TECTA | SORL1 | TECTA | 11 | 11 | 1 | 1 | 242 | 243 | 163 | 0.83 | 121403261 | 121058541 | tier1 | In-frame | 16607 | NA | 0 |
| BRCA | TCGA-AN-A0FT-01A | TCGA-AN-A0FT | SOX13|MERTK | SOX13 | MERTK | 1 | 2 | 1 | 1 | 2 | 3 | 3 | 1.8 | 204083733 | 112725714 | tier3 | In-frame | 16616 | NA | 0 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | SPAG5|SLC47A1 | SPAG5 | SLC47A1 | 17 | 17 | -1 | 1 | 29 | 14 | 13 | 1.6 | 26912882 | 19445706 | tier1 | In-frame | 16654 | NA | 0 |
| BRCA | TCGA-EW-A1OV-01A | TCGA-EW-A1OV | SPAG9|SKAP1 | SPAG9 | SKAP1 | 17 | 17 | -1 | -1 | 45 | 20 | 10 | 0.46 | 49156945 | 46266862 | tier1 | In-frame | 16665 | NA | 0 |
| BRCA | TCGA-A7-A4SA-01A | TCGA-A7-A4SA | SPATA7|GABRA3 | SPATA7 | GABRA3 | 14 | X | 1 | -1 | 9 | 1 | 1 | 0.025 | 88904247 | 151337035 | tier2 | In-frame | 16681 | NA | 0 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | SPG11|CAMK2G | SPG11 | CAMK2G | 15 | 10 | -1 | -1 | 19 | 6 | 5 | 3.8 | 44865745 | 75613004 | tier1 | In-frame | 16721 | NA | 0 |
| BRCA | TCGA-A8-A0A9-01A | TCGA-A8-A0A9 | SRGAP1|GAB2 | SRGAP1 | GAB2 | 12 | 11 | 1 | -1 | 65 | 48 | 46 | 0.56 | 64480806 | 77991947 | tier1 | Out-of-frame | 16841 | NA | 0 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | SRGAP1|TMEM5 | SRGAP1 | TMEM5 | 12 | 12 | 1 | 1 | 3 | 3 | 3 | 2.2 | 64238663 | 64174799 | tier4 | In-frame | 16846 | NA | 0 |
| BRCA | TCGA-BH-A0DG-01A | TCGA-BH-A0DG | SRP68|LPO | SRP68 | LPO | 17 | 17 | -1 | 1 | 53 | 25 | 23 | 0.27 | 74036500 | 56327776 | tier1 | In-frame | 16859 | validated | 0 |
| BRCA | TCGA-E2-A1LL-01A | TCGA-E2-A1LL | SS18L1|CDH4 | SS18L1 | CDH4 | 20 | 20 | 1 | 1 | 140 | 58 | 57 | 0.53 | 60718945 | 60469966 | tier1 | In-frame | 16904 | non-validated | 0 |
| BRCA | TCGA-D8-A1JM-01A | TCGA-D8-A1JM | ST14|BARX2 | ST14 | BARX2 | 11 | 11 | 1 | 1 | 19 | 21 | 18 | 0.79 | 130029955 | 129306646 | tier1 | Out-of-frame | 16927 | NA | 0 |
| BRCA | TCGA-AR-A256-01A | TCGA-AR-A256 | ST14|ST7 | ST14 | ST7 | 11 | 7 | 1 | 1 | 57 | 28 | 27 | 0.36 | 130029955 | 116739816 | tier1 | Out-of-frame | 16928 | non-validated | 0 |
| BRCA | TCGA-BH-A0C7-01B | TCGA-BH-A0C7 | STAM2|THSD7B | STAM2 | THSD7B | 2 | 2 | -1 | 1 | 13 | 14 | 14 | 0.36 | 152982740 | 137813990 | tier1 | Out-of-frame | 16996 | NA | 0 |
| BRCA | TCGA-BH-A0C7-01B | TCGA-BH-A0C7 | STARD13|TNFRSF8 | STARD13 | TNFRSF8 | 13 | 1 | -1 | 1 | 6 | 3 | 3 | 0.063 | 33859607 | 12169623 | tier1 | In-frame | 17001 | NA | 0 |
| BRCA | TCGA-A8-A07W-01A | TCGA-A8-A07W | STIM1|FITM2 | STIM1 | FITM2 | 11 | 20 | 1 | -1 | 21 | 8 | 8 | 0.19 | 4104212 | 42935880 | tier1 | In-frame | 17035 | NA | 0 |
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