Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AO-A124-01A | TCGA-AO-A124 | SLC39A11|CD69 | SLC39A11 | CD69 | 17 | 12 | -1 | -1 | 6 | 2 | 2 | 0.58 | 70943891 | 9909015 | tier1 | In-frame | 16191 | non-validated | 0 |
| BRCA | TCGA-AO-A129-01A | TCGA-AO-A129 | SLC39A11|SDK2 | SLC39A11 | SDK2 | 17 | 17 | -1 | -1 | 10 | 12 | 11 | 0.3 | 71027695 | 71364732 | tier1 | In-frame | 16196 | NA | 0 |
| BRCA | TCGA-D8-A27M-01A | TCGA-D8-A27M | SLC39A11|SDK2 | SLC39A11 | SDK2 | 17 | 17 | -1 | -1 | 39 | 29 | 26 | 0.3 | 71084796 | 71335079 | tier1 | In-frame | 16197 | NA | 0 |
| BRCA | TCGA-D8-A1X5-01A | TCGA-D8-A1X5 | SLC39A14|PRKDC | SLC39A14 | PRKDC | 8 | 8 | 1 | -1 | 3 | 6 | 5 | 0.64 | 22224921 | 48762064 | tier1 | 5UTR-CDS | 16204 | NA | 0 |
| BRCA | TCGA-A7-A13E-01A | TCGA-A7-A13E | SLC39A3|PPAP2C | SLC39A3 | PPAP2C | 19 | 19 | -1 | -1 | 86 | 42 | 35 | 1.8 | 2737046 | 288171 | tier1 | Out-of-frame | 16207 | NA | 0 |
| BRCA | TCGA-D8-A1XQ-01A | TCGA-D8-A1XQ | SLC39A9|RAD51B | SLC39A9 | RAD51B | 14 | 14 | 1 | 1 | 11 | 5 | 4 | 1.1 | 69866182 | 69077723 | tier1 | Out-of-frame | 16213 | NA | 0 |
| BRCA | TCGA-AN-A0AS-01A | TCGA-AN-A0AS | SLC39A9|USP15 | SLC39A9 | USP15 | 14 | 12 | 1 | 1 | 4 | 13 | 12 | 0.17 | 69890919 | 62783211 | tier1 | Out-of-frame | 16215 | NA | 0 |
| BRCA | TCGA-AO-A1KR-01A | TCGA-AO-A1KR | SLC3A2|NXF1 | SLC3A2 | NXF1 | 11 | 11 | 1 | -1 | 15 | 10 | 10 | 0.24 | 62623853 | 62562479 | tier1 | In-frame | 16218 | NA | 0 |
| BRCA | TCGA-B6-A0X1-01A | TCGA-B6-A0X1 | SLC43A2|SCARF1 | SLC43A2 | SCARF1 | 17 | 17 | -1 | -1 | 5 | 3 | 2 | 0.11 | 1486498 | 1538911 | tier1 | Out-of-frame | 16226 | NA | 0 |
| BRCA | TCGA-A8-A06Z-01A | TCGA-A8-A06Z | SLC43A2|SMG6 | SLC43A2 | SMG6 | 17 | 17 | -1 | -1 | 14 | 17 | 17 | 2.4 | 1516489 | 2187029 | tier1 | In-frame | 16227 | NA | 0 |
| BRCA | TCGA-AC-A2FM-01A | TCGA-AC-A2FM | SLC9A3R1|RABEP1 | SLC9A3R1 | RABEP1 | 17 | 17 | 1 | 1 | 2 | 65 | 60 | 1.3 | 72765489 | 5283828 | tier4 | NA | 16300 | NA | 0 |
| BRCA | TCGA-EW-A1P0-01A | TCGA-EW-A1P0 | SLIT3|HSD17B4 | SLIT3 | HSD17B4 | 5 | 5 | -1 | 1 | 21 | 10 | 4 | 0.95 | 168310270 | 118792010 | tier1 | Out-of-frame | 16319 | NA | 0 |
| BRCA | TCGA-BH-A0H7-01A | TCGA-BH-A0H7 | SLMO2|PTPRT | SLMO2 | PTPRT | 20 | 20 | -1 | -1 | 26 | 8 | 8 | 0.34 | 57617754 | 41514572 | tier1 | Out-of-frame | 16326 | NA | 0 |
| BRCA | TCGA-C8-A8HP-01A | TCGA-C8-A8HP | SLX4|ADAM32 | SLX4 | ADAM32 | 16 | 8 | -1 | 1 | 9 | 7 | 7 | 8.2 | 3650980 | 39114706 | tier1 | Out-of-frame | 16331 | NA | 0 |
| BRCA | TCGA-E2-A15P-01A | TCGA-E2-A15P | SMAP1|C14orf132 | SMAP1 | C14orf132 | 6 | 14 | 1 | 1 | 8 | 6 | 5 | 0.076 | 71442214 | 96552848 | tier1 | CDS-5UTR | 16358 | NA | 0 |
| BRCA | TCGA-A7-A4SD-01A | TCGA-A7-A4SD | SMARCA4|DNM2 | SMARCA4 | DNM2 | 19 | 19 | 1 | 1 | 35 | 21 | 19 | 0.096 | 11071850 | 10883155 | tier1 | 5UTR-CDS | 16372 | NA | 0 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | SMARCA4|DNM2 | SMARCA4 | DNM2 | 19 | 19 | 1 | 1 | 161 | 100 | 93 | 0.096 | 11136184 | 10930656 | tier1 | In-frame | 16373 | NA | 0 |
| BRCA | TCGA-AR-A256-01A | TCGA-AR-A256 | SMARCA4|ICAM1 | SMARCA4 | ICAM1 | 19 | 19 | 1 | 1 | 16 | 17 | 16 | 0.19 | 11071850 | 10385441 | tier1 | 5UTR-CDS | 16376 | non-validated | 0 |
| BRCA | TCGA-A2-A0EY-01A | TCGA-A2-A0EY | SMG1|ANO3 | SMG1 | ANO3 | 16 | 11 | -1 | 1 | 3 | 9 | 6 | 0.31 | 18869492 | 26669256 | tier1 | In-frame | 16413 | non-validated | 0 |
| BRCA | TCGA-AR-A250-01A | TCGA-AR-A250 | SMURF2|NGFR | SMURF2 | NGFR | 17 | 17 | -1 | 1 | 14 | 16 | 16 | 0.13 | 62657947 | 47579425 | tier1 | Out-of-frame | 16456 | NA | 0 |
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