Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AO-A0JG-01A | TCGA-AO-A0JG | SKAP1|TMEM100 | SKAP1 | TMEM100 | 17 | 17 | -1 | -1 | 25 | 10 | 10 | 0.44 | 46423267 | 53800090 | tier1 | CDS-5UTR | 15976 | NA | 0 |
| BRCA | TCGA-C8-A275-01A | TCGA-C8-A275 | SKAP1|YPEL2 | SKAP1 | YPEL2 | 17 | 17 | -1 | 1 | 5 | 6 | 6 | 1 | 46423267 | 57465688 | tier1 | Out-of-frame | 15977 | NA | 0 |
| BRCA | TCGA-D8-A27F-01A | TCGA-D8-A27F | SKI|KCNT2 | SKI | KCNT2 | 1 | 1 | 1 | -1 | 14 | 6 | 3 | 0.028 | 2161174 | 196461471 | tier1 | Out-of-frame | 15980 | validated | 0 |
| BRCA | TCGA-EW-A3U0-01A | TCGA-EW-A3U0 | SKIL|GPR160 | SKIL | GPR160 | 3 | 3 | 1 | 1 | 5 | 7 | 6 | 0.3 | 170079217 | 169756703 | tier1 | CDS-5UTR | 15986 | non-validated | 0 |
| BRCA | TCGA-D8-A1XR-01A | TCGA-D8-A1XR | SLC12A8|BFSP2 | SLC12A8 | BFSP2 | 3 | 3 | -1 | 1 | 89 | 53 | 53 | 0.19 | 124930143 | 133169147 | tier1 | In-frame | 16021 | NA | 0 |
| BRCA | TCGA-AO-A12C-01A | TCGA-AO-A12C | SLC12A8|TMEM131 | SLC12A8 | TMEM131 | 3 | 2 | -1 | -1 | 2 | 1 | 1 | 0.82 | 124930143 | 98543950 | tier3 | Out-of-frame | 16024 | NA | 0 |
| BRCA | TCGA-A8-A09A-01A | TCGA-A8-A09A | SLC16A5|ICT1 | SLC16A5 | ICT1 | 17 | 17 | 1 | 1 | 15 | 11 | 11 | 0.77 | 73096911 | 73015795 | tier1 | In-frame | 16029 | NA | 0 |
| BRCA | TCGA-AR-A24L-01A | TCGA-AR-A24L | SLC16A9|ADK | SLC16A9 | ADK | 10 | 10 | -1 | 1 | 103 | 120 | 105 | 0.31 | 61469237 | 76468079 | tier1 | 5UTR-CDS | 16041 | NA | 0 |
| BRCA | TCGA-D8-A1Y0-01A | TCGA-D8-A1Y0 | SLC1A3|METTL15 | SLC1A3 | METTL15 | 5 | 11 | 1 | 1 | 2 | 7 | 7 | 0.054 | 36671335 | 28311753 | tier3 | In-frame | 16047 | NA | 0 |
| BRCA | TCGA-A7-A2KD-01A | TCGA-A7-A2KD | SLC20A2|DOCK8 | SLC20A2 | DOCK8 | 8 | 9 | -1 | 1 | 2 | 1 | 1 | 3.4 | 42286276 | 304581 | tier2 | Out-of-frame | 16058 | NA | 0 |
| BRCA | TCGA-A8-A08P-01A | TCGA-A8-A08P | SLC20A2|HIP1 | SLC20A2 | HIP1 | 8 | 7 | -1 | -1 | 11 | 11 | 10 | 1 | 42286276 | 75172293 | tier1 | In-frame | 16060 | NA | 0 |
| BRCA | TCGA-AR-A0U3-01A | TCGA-AR-A0U3 | SLC20A2|TUSC3 | SLC20A2 | TUSC3 | 8 | 8 | -1 | 1 | 9 | 5 | 5 | 0.48 | 42396681 | 15531256 | tier1 | NA | 16061 | NA | 0 |
| BRCA | TCGA-A8-A0A6-01A | TCGA-A8-A0A6 | SLC22A15|ANO1 | SLC22A15 | ANO1 | 1 | 11 | 1 | 1 | 7 | 20 | 20 | 0.81 | 116580009 | 69995816 | tier1 | In-frame | 16063 | NA | 0 |
| BRCA | TCGA-E2-A1IO-01A | TCGA-E2-A1IO | SLC22A23|GRIP1 | SLC22A23 | GRIP1 | 6 | 12 | -1 | -1 | 3 | 1 | 1 | 1.2 | 3410422 | 66935730 | tier3 | In-frame | 16068 | NA | 0 |
| BRCA | TCGA-E9-A1RH-01A | TCGA-E9-A1RH | SLC22A23|NAALADL2 | SLC22A23 | NAALADL2 | 6 | 3 | -1 | 1 | 7 | 4 | 4 | 1.2 | 3410422 | 175455094 | tier1 | Out-of-frame | 16070 | NA | 0 |
| BRCA | TCGA-B6-A0WX-01A | TCGA-B6-A0WX | SLC24A3|PLCB4 | SLC24A3 | PLCB4 | 20 | 20 | 1 | 1 | 2 | 4 | 4 | 0.81 | 19566188 | 9343543 | tier2 | In-frame | 16082 | non-validated | 0 |
| BRCA | TCGA-E2-A1LI-01A | TCGA-E2-A1LI | SLC29A1|DSP | SLC29A1 | DSP | 6 | 6 | 1 | 1 | 2 | 7 | 1 | 0.071 | 44201878 | 7575528 | tier3 | 3UTR-CDS | 16124 | NA | 0 |
| BRCA | TCGA-D8-A1XT-01A | TCGA-D8-A1XT | SLC2A1|GRHL3 | SLC2A1 | GRHL3 | 1 | 1 | -1 | 1 | 11 | 6 | 6 | 1 | 43424305 | 24657916 | tier1 | CDS-5UTR | 16126 | NA | 0 |
| BRCA | TCGA-A8-A09M-01A | TCGA-A8-A09M | SLC30A9|SLC2A9 | SLC30A9 | SLC2A9 | 4 | 4 | 1 | -1 | 5 | 8 | 8 | 0.23 | 42003797 | 9909969 | tier1 | Out-of-frame | 16148 | NA | 0 |
| BRCA | TCGA-A2-A25B-01A | TCGA-A2-A25B | SLC38A11|RABGAP1L | SLC38A11 | RABGAP1L | 2 | 1 | -1 | 1 | 3 | 4 | 3 | 0.26 | 165765150 | 174926594 | tier1 | In-frame | 16185 | non-validated | 0 |
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