Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-XF-A9T5-01A | TCGA-XF-A9T5 | CD74|CD40 | CD74 | CD40 | 5 | 20 | -1 | 1 | 2 | 21 | 8 | 0.008 | 149781200 | 44754189 | tier3 | NA | 3288 | NA | 0.38008 |
| BLCA | TCGA-2F-A9KT-01A | TCGA-2F-A9KT | CDC42BPG|EHD1 | CDC42BPG | EHD1 | 11 | 11 | -1 | -1 | 5 | 5 | 5 | 0.022 | 64611882 | 64627808 | tier4 | In-frame | 3345 | NA | 0.37599 |
| BLCA | TCGA-GC-A3RB-01A | TCGA-GC-A3RB | CDC5L|TMEM63B | CDC5L | TMEM63B | 6 | 6 | 1 | 1 | 46 | 33 | 29 | 0.22 | 44376369 | 44102298 | tier1 | CDS-5UTR | 3361 | NA | 0.37352 |
| BLCA | TCGA-DK-A6AV-01A | TCGA-DK-A6AV | CDH3|CHKA | CDH3 | CHKA | 16 | 11 | 1 | -1 | 311 | 175 | 168 | 0.33 | 68718727 | 67836404 | tier1 | In-frame | 3391 | NA | 0.35723 |
| BLCA | TCGA-FD-A5BR-01A | TCGA-FD-A5BR | CDK1|NRG1 | CDK1 | NRG1 | 10 | 8 | 1 | 1 | 2 | 2 | 2 | 0.75 | 62539960 | 32585467 | tier3 | In-frame | 3397 | NA | 0.37603 |
| BLCA | TCGA-ZF-AA4T-01A | TCGA-ZF-AA4T | CDK12|PLXDC1 | CDK12 | PLXDC1 | 17 | 17 | 1 | -1 | 9 | 6 | 5 | 0.15 | 37619370 | 37265644 | tier1 | Out-of-frame | 3408 | NA | 0.341 |
| BLCA | TCGA-C4-A0F7-01A | TCGA-C4-A0F7 | CEP128|TSHR | CEP128 | TSHR | 14 | 14 | -1 | 1 | 4 | 1 | 1 | 0.22 | 81227781 | 81562983 | tier4 | Out-of-frame | 3534 | validated | 0.37744 |
| BLCA | TCGA-FD-A5BS-01A | TCGA-FD-A5BS | CERS2|SETDB1 | CERS2 | SETDB1 | 1 | 1 | -1 | 1 | 3 | 1 | 1 | 1.4 | 150940140 | 150919362 | tier3 | In-frame | 3572 | NA | 0.36603 |
| BLCA | TCGA-UY-A9PE-01A | TCGA-UY-A9PE | CERS6|PSMD14 | CERS6 | PSMD14 | 2 | 2 | 1 | 1 | 3 | 2 | 2 | 0.48 | 169574488 | 162223989 | tier1 | Out-of-frame | 3578 | NA | 0.34586 |
| BLCA | TCGA-CF-A1HR-01A | TCGA-CF-A1HR | CIDEB|ADCY4 | CIDEB | ADCY4 | 14 | 14 | -1 | -1 | 3 | 1 | 1 | 0.038 | 24776577 | 24787984 | tier3 | Out-of-frame | 3733 | NA | 0.35195 |
| BLCA | TCGA-E7-A85H-01A | TCGA-E7-A85H | CNOT1|GOT2 | CNOT1 | GOT2 | 16 | 16 | -1 | -1 | 5 | 4 | 3 | 0.72 | 58608513 | 58757806 | tier1 | In-frame | 3923 | NA | 0.36277 |
| BLCA | TCGA-FD-A6TA-01A | TCGA-FD-A6TA | COBLL1|SCN3A | COBLL1 | SCN3A | 2 | 2 | -1 | -1 | 16 | 19 | 17 | 0.88 | 165697666 | 166027058 | tier1 | Out-of-frame | 3962 | NA | 0.35714 |
| BLCA | TCGA-DK-A1A5-01A | TCGA-DK-A1A5 | COIL|CA4 | COIL | CA4 | 17 | 17 | -1 | 1 | 10 | 6 | 6 | 0.37 | 55038136 | 58232675 | tier1 | Out-of-frame | 3985 | non-validated | 0.36683 |
| BLCA | TCGA-GD-A3OS-01A | TCGA-GD-A3OS | COL6A2|DDX27 | COL6A2 | DDX27 | 21 | 20 | 1 | 1 | 2 | 30 | 14 | 4 | 47552763 | 47849303 | tier3 | NA | 4043 | NA | 0.36507 |
| BLCA | TCGA-XF-AAMX-01A | TCGA-XF-AAMX | CPD|PDE4D | CPD | PDE4D | 17 | 5 | 1 | -1 | 6 | 6 | 5 | 0.22 | 28770989 | 58511794 | tier1 | In-frame | 4110 | NA | 0.36934 |
| BLCA | TCGA-UY-A9PB-01A | TCGA-UY-A9PB | CREBBP|ADCY9 | CREBBP | ADCY9 | 16 | 16 | -1 | -1 | 4 | 2 | 2 | 0.07 | 3929833 | 4016967 | tier1 | Out-of-frame | 4199 | NA | 0.38677 |
| BLCA | TCGA-DK-A6AV-01A | TCGA-DK-A6AV | CREBL2|GPR19 | CREBL2 | GPR19 | 12 | 12 | 1 | -1 | 3 | 2 | 2 | 0.81 | 12765121 | 12848445 | tier1 | CDS-5UTR | 4215 | NA | 0.34983 |
| BLCA | TCGA-XF-A9SP-01A | TCGA-XF-A9SP | CRISPLD1|LY96 | CRISPLD1 | LY96 | 8 | 8 | 1 | 1 | 2 | 1 | 1 | 0.32 | 75926337 | 74922236 | tier3 | Out-of-frame | 4227 | NA | 0.35229 |
| BLCA | TCGA-BT-A0YX-01A | TCGA-BT-A0YX | CTC-203F4.1|JUP | CTC-203F4.1 | JUP | 5 | 17 | 1 | -1 | 117 | 109 | 86 | 0.31 | 134509862 | 39915122 | tier1 | 5UTR-CDS | 4309 | NA | 0.36584 |
| BLCA | TCGA-4Z-AA84-01A | TCGA-4Z-AA84 | CTNNA1|LARP1 | CTNNA1 | LARP1 | 5 | 5 | 1 | 1 | 2 | 2 | 2 | 0.26 | 138088860 | 154190807 | tier2 | NA | 4349 | NA | 0.37019 |
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