Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-D8-A27R-01A | TCGA-D8-A27R | SENP6|GPR124 | SENP6 | GPR124 | 6 | 8 | 1 | 1 | 8 | 5 | 5 | 1.5 | 76373234 | 37672414 | tier1 | Out-of-frame | 15583 | NA | 0 |
| BRCA | TCGA-EW-A1OZ-01A | TCGA-EW-A1OZ | SEPT9|LPP | SEPT9 | LPP | 17 | 3 | 1 | 1 | 6 | 3 | 3 | 0.83 | 75303279 | 188202380 | tier2 | 5UTR-CDS | 15610 | NA | 0 |
| BRCA | TCGA-AC-A2BK-01A | TCGA-AC-A2BK | SERINC2|ARHGEF1 | SERINC2 | ARHGEF1 | 1 | 19 | 1 | 1 | 5 | 3 | 3 | 0.07 | 31902385 | 42398280 | tier1 | In-frame | 15629 | non-validated | 0 |
| BRCA | TCGA-E9-A1NF-01A | TCGA-E9-A1NF | SERINC3|TWSG1 | SERINC3 | TWSG1 | 20 | 18 | -1 | 1 | 3 | 2 | 2 | 0.17 | 43128899 | 9396278 | tier1 | 3UTR-CDS | 15639 | NA | 0 |
| BRCA | TCGA-C8-A27A-01A | TCGA-C8-A27A | SERINC5|CTC-236F12.4 | SERINC5 | CTC-236F12.4 | 5 | 5 | -1 | -1 | 79 | 47 | 39 | 100 | 79454659 | 55753770 | tier1 | In-frame | 15641 | NA | 0 |
| BRCA | TCGA-A8-A081-01A | TCGA-A8-A081 | SERPINI1|NAALADL2 | SERPINI1 | NAALADL2 | 3 | 3 | 1 | 1 | 3 | 7 | 7 | 1.2 | 167453611 | 174814580 | tier1 | 5UTR-CDS | 15674 | NA | 0 |
| BRCA | TCGA-OL-A5D8-01A | TCGA-OL-A5D8 | SETDB1|CD46 | SETDB1 | CD46 | 1 | 1 | 1 | 1 | 19 | 13 | 13 | 0.15 | 150923957 | 207930359 | tier1 | Out-of-frame | 15711 | NA | 0 |
| BRCA | TCGA-E2-A1LK-01A | TCGA-E2-A1LK | SETDB1|PKP4 | SETDB1 | PKP4 | 1 | 2 | 1 | 1 | 6 | 3 | 3 | 0.075 | 150915164 | 159477502 | tier1 | In-frame | 15712 | non-validated | 0 |
| BRCA | TCGA-BH-A0C0-01A | TCGA-BH-A0C0 | SF1|ITPR1 | SF1 | ITPR1 | 11 | 3 | -1 | 1 | 6 | 8 | 8 | 0.36 | 64543970 | 4669447 | tier1 | In-frame | 15722 | NA | 0 |
| BRCA | TCGA-A8-A08I-01A | TCGA-A8-A08I | SHANK1|MTHFD1L | SHANK1 | MTHFD1L | 19 | 6 | -1 | 1 | 7 | 6 | 6 | 3 | 51175275 | 151330955 | tier1 | In-frame | 15846 | NA | 0 |
| BRCA | TCGA-B6-A0RS-01A | TCGA-B6-A0RS | SHANK2|ANXA13 | SHANK2 | ANXA13 | 11 | 8 | -1 | -1 | 76 | 82 | 79 | 1.8 | 70935743 | 124724993 | tier1 | NA | 15848 | NA | 0 |
| BRCA | TCGA-E2-A14N-01A | TCGA-E2-A14N | SHANK2|OPCML | SHANK2 | OPCML | 11 | 11 | -1 | -1 | 3 | 3 | 3 | 0.63 | 70505933 | 132399080 | tier1 | Out-of-frame | 15858 | NA | 0 |
| BRCA | TCGA-E2-A1L7-01A | TCGA-E2-A1L7 | SHANK3|PLXNB2 | SHANK3 | PLXNB2 | 22 | 22 | 1 | -1 | 7 | 3 | 3 | 0.011 | 51160865 | 50729026 | tier1 | CDS-5UTR | 15866 | NA | 0 |
| BRCA | TCGA-JL-A3YW-01A | TCGA-JL-A3YW | SHB|SLC28A3 | SHB | SLC28A3 | 9 | 9 | -1 | -1 | 5 | 4 | 4 | 1.7 | 38067926 | 86928369 | tier1 | In-frame | 15875 | NA | 0 |
| BRCA | TCGA-BH-A0H9-01A | TCGA-BH-A0H9 | SIL1|NRG2 | SIL1 | NRG2 | 5 | 5 | -1 | -1 | 54 | 57 | 51 | 0.073 | 138456724 | 139267096 | tier1 | In-frame | 15923 | NA | 0 |
| BRCA | TCGA-3C-AAAU-01A | TCGA-3C-AAAU | SIN3A|CSPG4 | SIN3A | CSPG4 | 15 | 15 | -1 | -1 | 3 | 3 | 2 | 0.047 | 75743764 | 75985574 | tier1 | 5UTR-CDS | 15932 | NA | 0 |
| BRCA | TCGA-PE-A5DD-01A | TCGA-PE-A5DD | SIN3A|NEO1 | SIN3A | NEO1 | 15 | 15 | -1 | 1 | 6 | 5 | 5 | 1.7 | 75743764 | 73528688 | tier1 | 5UTR-CDS | 15933 | NA | 0 |
| BRCA | TCGA-BH-A0C3-01A | TCGA-BH-A0C3 | SKAP1|ABCC11 | SKAP1 | ABCC11 | 17 | 16 | -1 | -1 | 28 | 15 | 15 | 3.3 | 46423267 | 48211024 | tier1 | Out-of-frame | 15966 | NA | 0 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | SKAP1|BCAS3 | SKAP1 | BCAS3 | 17 | 17 | -1 | 1 | 5 | 9 | 9 | 0.2 | 46423267 | 58885365 | tier1 | In-frame | 15967 | NA | 0 |
| BRCA | TCGA-AR-A24U-01A | TCGA-AR-A24U | SKAP1|IKZF3 | SKAP1 | IKZF3 | 17 | 17 | -1 | -1 | 16 | 11 | 11 | 0.54 | 46423267 | 37922746 | tier1 | In-frame | 15973 | NA | 0 |
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