Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-EW-A6SA-01A | TCGA-EW-A6SA | SBNO2|SERINC2 | SBNO2 | SERINC2 | 19 | 1 | -1 | 1 | 20 | 20 | 17 | 0.031 | 1149368 | 31905814 | tier1 | In-frame | 15356 | NA | 0 |
| BRCA | TCGA-A2-A0T4-01A | TCGA-A2-A0T4 | SCAF8|C6orf72 | SCAF8 | C6orf72 | 6 | 6 | 1 | 1 | 2 | 6 | 6 | 1.3 | 155055064 | 149893421 | tier3 | In-frame | 15365 | NA | 0 |
| BRCA | TCGA-D8-A27H-01A | TCGA-D8-A27H | SCAMP2|SLC12A8 | SCAMP2 | SLC12A8 | 15 | 3 | -1 | -1 | 71 | 31 | 28 | 1.1 | 75165540 | 124811042 | tier1 | Out-of-frame | 15374 | validated | 0 |
| BRCA | TCGA-B6-A0I1-01A | TCGA-B6-A0I1 | SCARB1|DHX37 | SCARB1 | DHX37 | 12 | 12 | -1 | -1 | 24 | 13 | 11 | 1.8 | 125348141 | 125462036 | tier1 | In-frame | 15388 | validated | 0 |
| BRCA | TCGA-A2-A0D0-01A | TCGA-A2-A0D0 | SCARB2|STAU2 | SCARB2 | STAU2 | 4 | 8 | -1 | -1 | 10 | 21 | 19 | 0.69 | 77116860 | 74495065 | tier1 | Out-of-frame | 15395 | non-validated | 0 |
| BRCA | TCGA-B6-A0RT-01A | TCGA-B6-A0RT | SCCPDH|CNST | SCCPDH | CNST | 1 | 1 | 1 | 1 | 10 | 6 | 6 | 0.037 | 246890306 | 246823501 | tier4 | In-frame | 15396 | non-validated | 0 |
| BRCA | TCGA-A8-A07I-01A | TCGA-A8-A07I | SCD|GPR19 | SCD | GPR19 | 10 | 12 | 1 | -1 | 52 | 40 | 35 | 1.2 | 102108103 | 12815404 | tier1 | CDS-5UTR | 15397 | validated | 0 |
| BRCA | TCGA-E9-A3Q9-01A | TCGA-E9-A3Q9 | SCGB1D2|IQGAP1 | SCGB1D2 | IQGAP1 | 11 | 15 | 1 | 1 | 4 | 23 | 1 | 1.5 | 62012280 | 91037945 | tier4 | 3UTR-CDS | 15408 | NA | 0 |
| BRCA | TCGA-BH-A1FE-01A | TCGA-BH-A1FE | SCML4|TUSC3 | SCML4 | TUSC3 | 6 | 8 | -1 | 1 | 3 | 2 | 2 | 1.1 | 108093376 | 15480589 | tier1 | In-frame | 15425 | NA | 0 |
| BRCA | TCGA-A2-A04T-01A | TCGA-A2-A04T | SCNN1G|COL27A1 | SCNN1G | COL27A1 | 16 | 9 | 1 | 1 | 15 | 6 | 5 | 0.97 | 23224484 | 116924995 | tier1 | In-frame | 15432 | non-validated | 0 |
| BRCA | TCGA-B6-A0I1-01A | TCGA-B6-A0I1 | SCRN2|SKAP1 | SCRN2 | SKAP1 | 17 | 17 | -1 | -1 | 2 | 4 | 4 | 0.36 | 45915636 | 46211178 | tier2 | CDS-3UTR | 15442 | non-validated | 0 |
| BRCA | TCGA-A8-A07U-01A | TCGA-A8-A07U | SCUBE3|ANKS1A | SCUBE3 | ANKS1A | 6 | 6 | 1 | 1 | 6 | 4 | 3 | 0.48 | 35196516 | 35050468 | tier1 | Out-of-frame | 15444 | NA | 0 |
| BRCA | TCGA-AR-A1AH-01A | TCGA-AR-A1AH | SCUBE3|ANKS1A | SCUBE3 | ANKS1A | 6 | 6 | 1 | 1 | 3 | 1 | 1 | 0.48 | 35196516 | 35085023 | tier3 | NA | 15445 | NA | 0 |
| BRCA | TCGA-BH-A1F6-01A | TCGA-BH-A1F6 | SDCCAG8|C1orf101 | SDCCAG8 | C1orf101 | 1 | 1 | 1 | 1 | 3 | 3 | 2 | 0.025 | 243581378 | 244715624 | tier1 | In-frame | 15476 | NA | 0 |
| BRCA | TCGA-S3-AA11-01A | TCGA-S3-AA11 | SEC31B|GRID1 | SEC31B | GRID1 | 10 | 10 | -1 | -1 | 8 | 8 | 8 | 3.4 | 102265118 | 87407154 | tier1 | Out-of-frame | 15526 | NA | 0 |
| BRCA | TCGA-B6-A0IC-01A | TCGA-B6-A0IC | SEMA3C|AUTS2 | SEMA3C | AUTS2 | 7 | 7 | -1 | 1 | 3 | 6 | 6 | 1.1 | 80418622 | 69900738 | tier1 | Out-of-frame | 15542 | NA | 0 |
| BRCA | TCGA-E2-A1LL-01A | TCGA-E2-A1LL | SEMA3C|CNTNAP2 | SEMA3C | CNTNAP2 | 7 | 7 | -1 | 1 | 4 | 5 | 5 | 0.15 | 80545995 | 148112509 | tier1 | In-frame | 15544 | non-validated | 0 |
| BRCA | TCGA-AO-A124-01A | TCGA-AO-A124 | SEMA4C|WNT5B | SEMA4C | WNT5B | 2 | 12 | -1 | 1 | 13 | 14 | 12 | 0.083 | 97529419 | 1740464 | tier1 | CDS-5UTR | 15563 | non-validated | 0 |
| BRCA | TCGA-BH-A0HI-01A | TCGA-BH-A0HI | SEMA6A|DTWD2 | SEMA6A | DTWD2 | 5 | 5 | -1 | -1 | 3 | 3 | 2 | 1.1 | 115909881 | 118280344 | tier1 | 5UTR-CDS | 15568 | NA | 0 |
| BRCA | TCGA-A8-A08I-01A | TCGA-A8-A08I | SEMA6A|LSM6 | SEMA6A | LSM6 | 5 | 4 | -1 | 1 | 14 | 7 | 7 | 1.1 | 115822445 | 147104064 | tier1 | CDS-5UTR | 15569 | NA | 0 |
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