Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A0C0-01A | TCGA-BH-A0C0 | RP11-47I22.3|PRKCH | RP11-47I22.3 | PRKCH | 14 | 14 | 1 | 1 | 5 | 7 | 7 | 0.58 | 62037478 | 61995793 | tier1 | Out-of-frame | 14935 | NA | 0 |
| BRCA | TCGA-EW-A1P1-01A | TCGA-EW-A1P1 | RP11-47I22.3|PRKCH | RP11-47I22.3 | PRKCH | 14 | 14 | 1 | 1 | 18 | 8 | 8 | 0.58 | 62037478 | 61909829 | tier1 | Out-of-frame | 14937 | NA | 0 |
| BRCA | TCGA-AR-A256-01A | TCGA-AR-A256 | RP11-680F20.9|KIRREL3 | RP11-680F20.9 | KIRREL3 | 11 | 11 | -1 | -1 | 3 | 2 | 2 | 0.022 | 125801200 | 126432807 | tier1 | 5UTR-CDS | 14943 | validated | 0 |
| BRCA | TCGA-D8-A1JK-01A | TCGA-D8-A1JK | RP11-73M18.2|MARK3 | RP11-73M18.2 | MARK3 | 14 | 14 | 1 | 1 | 11 | 7 | 5 | 0.027 | 104136620 | 103915256 | tier1 | In-frame | 14946 | NA | 0 |
| BRCA | TCGA-OL-A6VO-01A | TCGA-OL-A6VO | RP4-761I2.2|ENPP3 | RP4-761I2.2 | ENPP3 | 6 | 6 | 1 | 1 | 3 | 2 | 2 | 0.047 | 11094622 | 131958375 | tier1 | CDS-5UTR | 14959 | NA | 0 |
| BRCA | TCGA-C8-A12K-01A | TCGA-C8-A12K | RP4-761I2.2|MIB2 | RP4-761I2.2 | MIB2 | 6 | 1 | 1 | 1 | 7 | 3 | 3 | 6.8 | 11094622 | 1551888 | tier1 | Out-of-frame | 14960 | NA | 0 |
| BRCA | TCGA-A8-A08J-01A | TCGA-A8-A08J | RP4-788L13.1|IQGAP3 | RP4-788L13.1 | IQGAP3 | 1 | 1 | 1 | -1 | 3 | 1 | 1 | 0.33 | 99730227 | 156521887 | tier2 | Out-of-frame | 14964 | NA | 0 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | RPRD2|CA14 | RPRD2 | CA14 | 1 | 1 | 1 | 1 | 3 | 4 | 4 | 0.48 | 150416853 | 150232546 | tier1 | In-frame | 15027 | non-validated | 0 |
| BRCA | TCGA-EW-A424-01A | TCGA-EW-A424 | RPS19BP1|KCNE1 | RPS19BP1 | KCNE1 | 22 | 21 | -1 | -1 | 15 | 19 | 19 | 0.031 | 39928400 | 35831034 | tier1 | CDS-5UTR | 15038 | NA | 0 |
| BRCA | TCGA-A2-A0CL-01A | TCGA-A2-A0CL | RPS6KB2|C10orf54 | RPS6KB2 | C10orf54 | 11 | 10 | 1 | -1 | 13 | 15 | 11 | 1 | 67196094 | 73515223 | tier1 | Out-of-frame | 15092 | NA | 0 |
| BRCA | TCGA-BH-A203-01A | TCGA-BH-A203 | RPS6KC1|C1orf101 | RPS6KC1 | C1orf101 | 1 | 1 | 1 | 1 | 17 | 13 | 13 | 0.19 | 213277911 | 244715624 | tier1 | Out-of-frame | 15096 | NA | 0 |
| BRCA | TCGA-EW-A3U0-01A | TCGA-EW-A3U0 | RRM1|STIM1 | RRM1 | STIM1 | 11 | 11 | 1 | 1 | 48 | 23 | 23 | 0.13 | 4116261 | 4107707 | tier1 | In-frame | 15130 | non-validated | 0 |
| BRCA | TCGA-XX-A899-01A | TCGA-XX-A899 | RSF1|ADAM2 | RSF1 | ADAM2 | 11 | 8 | -1 | -1 | 20 | 22 | 22 | 1.1 | 77458081 | 39607263 | tier1 | In-frame | 15142 | NA | 0 |
| BRCA | TCGA-BH-A0EB-01A | TCGA-BH-A0EB | RSF1|ODZ4 | RSF1 | ODZ4 | 11 | 11 | -1 | -1 | 4 | 4 | 4 | 5.8 | 77436590 | 78567223 | tier1 | In-frame | 15151 | NA | 0 |
| BRCA | TCGA-AC-A2QH-01B | TCGA-AC-A2QH | RTN3|CSMD1 | RTN3 | CSMD1 | 11 | 8 | 1 | -1 | 2 | 12 | 11 | 0.61 | 63449250 | 3855632 | tier2 | In-frame | 15166 | NA | 0 |
| BRCA | TCGA-BH-A0DL-01A | TCGA-BH-A0DL | RYK|RABL3 | RYK | RABL3 | 3 | 3 | -1 | -1 | 20 | 22 | 20 | 0.4 | 133921574 | 120417420 | tier1 | In-frame | 15216 | NA | 0 |
| BRCA | TCGA-A8-A07C-01A | TCGA-A8-A07C | RYR2|GPR137B | RYR2 | GPR137B | 1 | 1 | 1 | 1 | 3 | 2 | 2 | 0.099 | 237780786 | 236368426 | tier1 | In-frame | 15218 | NA | 0 |
| BRCA | TCGA-BH-A5IZ-01A | TCGA-BH-A5IZ | RYR3|LARP4 | RYR3 | LARP4 | 15 | 12 | 1 | 1 | 10 | 9 | 8 | 3.6 | 34034645 | 50821545 | tier1 | In-frame | 15222 | NA | 0 |
| BRCA | TCGA-BH-A18V-01A | TCGA-BH-A18V | SARS|KIAA1324 | SARS | KIAA1324 | 1 | 1 | 1 | 1 | 104 | 71 | 66 | 0.8 | 109766670 | 109704516 | tier1 | In-frame | 15313 | NA | 0 |
| BRCA | TCGA-GM-A2DD-01A | TCGA-GM-A2DD | SBNO2|C19orf26 | SBNO2 | C19orf26 | 19 | 19 | -1 | -1 | 6 | 6 | 6 | 0.003 | 1147308 | 1233635 | tier4 | In-frame | 15346 | NA | 0 |
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