Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A7-A3J0-01A | TCGA-A7-A3J0 | RIMS2|BAALC | RIMS2 | BAALC | 8 | 8 | 1 | 1 | 8 | 6 | 5 | 0.23 | 104513290 | 104225147 | tier1 | Out-of-frame | 14693 | NA | 0 |
| BRCA | TCGA-BH-A18V-01A | TCGA-BH-A18V | RIMS2|BAALC | RIMS2 | BAALC | 8 | 8 | 1 | 1 | 10 | 10 | 10 | 0.23 | 104513290 | 104240217 | tier1 | Out-of-frame | 14694 | NA | 0 |
| BRCA | TCGA-E9-A22B-01A | TCGA-E9-A22B | RIMS2|ODF1 | RIMS2 | ODF1 | 8 | 8 | 1 | 1 | 50 | 61 | 53 | 0.082 | 104513290 | 103572680 | tier1 | In-frame | 14697 | NA | 0 |
| BRCA | TCGA-A2-A3XW-01A | TCGA-A2-A3XW | RIMS2|PTGIS | RIMS2 | PTGIS | 8 | 20 | 1 | -1 | 3 | 3 | 2 | 2 | 105161076 | 48160985 | tier1 | Out-of-frame | 14698 | NA | 0 |
| BRCA | TCGA-AN-A0FJ-01A | TCGA-AN-A0FJ | RIPK1|NQO2 | RIPK1 | NQO2 | 6 | 6 | 1 | 1 | 2 | 3 | 3 | 2.7 | 3089891 | 3006702 | tier2 | CDS-5UTR | 14704 | NA | 0 |
| BRCA | TCGA-AC-A2FM-01A | TCGA-AC-A2FM | RNF10|SYPL1 | RNF10 | SYPL1 | 12 | 7 | 1 | -1 | 50 | 31 | 31 | 0.29 | 120998689 | 105739728 | tier1 | In-frame | 14726 | NA | 0 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | RNF121|ANO1 | RNF121 | ANO1 | 11 | 11 | 1 | 1 | 2 | 2 | 2 | 1.6 | 71671937 | 69933858 | tier3 | In-frame | 14738 | non-validated | 0 |
| BRCA | TCGA-BH-A204-01A | TCGA-BH-A204 | RNF122|NEGR1 | RNF122 | NEGR1 | 8 | 1 | -1 | -1 | 43 | 19 | 18 | 0.39 | 33424217 | 71873253 | tier1 | In-frame | 14751 | NA | 0 |
| BRCA | TCGA-A7-A4SE-01A | TCGA-A7-A4SE | RNF13|ATP8A2 | RNF13 | ATP8A2 | 3 | 13 | 1 | 1 | 3 | 4 | 4 | 0.98 | 149570383 | 26273311 | tier1 | In-frame | 14756 | NA | 0 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | RNF13|TM4SF4 | RNF13 | TM4SF4 | 3 | 3 | 1 | 1 | 21 | 23 | 23 | 100 | 149531140 | 149216509 | tier1 | 5UTR-CDS | 14758 | non-validated | 0 |
| BRCA | TCGA-B6-A0RT-01A | TCGA-B6-A0RT | RNF19A|SLC41A3 | RNF19A | SLC41A3 | 8 | 3 | -1 | -1 | 10 | 6 | 6 | 1.3 | 101348336 | 125731592 | tier1 | NA | 14807 | non-validated | 0 |
| BRCA | TCGA-D8-A27R-01A | TCGA-D8-A27R | RNF213|SLC26A11 | RNF213 | SLC26A11 | 17 | 17 | 1 | 1 | 2 | 2 | 2 | 0.56 | 78237577 | 78215570 | tier3 | In-frame | 14816 | NA | 0 |
| BRCA | TCGA-B6-A0IM-01A | TCGA-B6-A0IM | RNF216|ST14 | RNF216 | ST14 | 7 | 11 | -1 | 1 | 58 | 37 | 28 | 0.71 | 5751392 | 130058009 | tier1 | In-frame | 14828 | NA | 0 |
| BRCA | TCGA-A7-A26F-01A | TCGA-A7-A26F | ROBO1|HECW2 | ROBO1 | HECW2 | 3 | 2 | -1 | -1 | 2 | 1 | 1 | 0.15 | 79067557 | 197106928 | tier2 | In-frame | 14865 | NA | 0 |
| BRCA | TCGA-A8-A091-01A | TCGA-A8-A091 | ROCK1|LRIG3 | ROCK1 | LRIG3 | 18 | 12 | -1 | -1 | 23 | 5 | 5 | 0.079 | 18625253 | 59308117 | tier1 | In-frame | 14888 | NA | 0 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | ROD1|ASTN2 | ROD1 | ASTN2 | 9 | 9 | -1 | -1 | 5 | 1 | 1 | 1.2 | 115095750 | 119770538 | tier4 | 5UTR-CDS | 14897 | NA | 0 |
| BRCA | TCGA-AQ-A04L-01B | TCGA-AQ-A04L | ROR2|KCNC2 | ROR2 | KCNC2 | 9 | 12 | -1 | -1 | 4 | 5 | 5 | 0.24 | 94710889 | 75445097 | tier1 | 5UTR-CDS | 14903 | NA | 0 |
| BRCA | TCGA-A7-A2KD-01A | TCGA-A7-A2KD | RP11-123B3.6|PREX1 | RP11-123B3.6 | PREX1 | 10 | 20 | -1 | -1 | 24 | 4 | 4 | 0.83 | 50736463 | 47324959 | tier1 | Out-of-frame | 14915 | NA | 0 |
| BRCA | TCGA-AC-A7VB-01A | TCGA-AC-A7VB | RP11-150O12.1|CPM | RP11-150O12.1 | CPM | 8 | 12 | -1 | -1 | 13 | 5 | 5 | 0.004 | 37333360 | 69279669 | tier1 | 3UTR-CDS | 14917 | NA | 0 |
| BRCA | TCGA-AQ-A04J-01A | TCGA-AQ-A04J | RP11-35N6.1|SLC35F3 | RP11-35N6.1 | SLC35F3 | 9 | 1 | 1 | 1 | 2 | 2 | 2 | 0.89 | 103791384 | 234444847 | tier2 | 5UTR-CDS | 14925 | validated | 0 |
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