Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | RAB3IP|FRS2 | RAB3IP | FRS2 | 12 | 12 | 1 | 1 | 3 | 2 | 2 | 2.4 | 70150443 | 69924645 | tier1 | CDS-5UTR | 14099 | NA | 0 |
| BRCA | TCGA-A8-A08J-01A | TCGA-A8-A08J | RABGAP1L|LGR6 | RABGAP1L | LGR6 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 3 | 174606626 | 202266636 | tier2 | Out-of-frame | 14150 | NA | 0 |
| BRCA | TCGA-AQ-A04H-01B | TCGA-AQ-A04H | RAC3|ABCA8 | RAC3 | ABCA8 | 17 | 17 | 1 | -1 | 3 | 5 | 5 | 2.6 | 79989672 | 66865920 | tier1 | In-frame | 14152 | NA | 0 |
| BRCA | TCGA-D8-A1XQ-01A | TCGA-D8-A1XQ | RAD18|CD86 | RAD18 | CD86 | 3 | 3 | -1 | 1 | 2 | 2 | 2 | 2 | 8940578 | 121810448 | tier4 | In-frame | 14158 | NA | 0 |
| BRCA | TCGA-A8-A08J-01A | TCGA-A8-A08J | RALGAPB|EPB41L1 | RALGAPB | EPB41L1 | 20 | 20 | 1 | 1 | 5 | 4 | 4 | 0.21 | 37146643 | 34761686 | tier1 | CDS-5UTR | 14228 | NA | 0 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | RAMP1|RBM44 | RAMP1 | RBM44 | 2 | 2 | 1 | 1 | 2 | 1 | 1 | 100 | 238768370 | 238722235 | tier3 | CDS-5UTR | 14246 | non-validated | 0 |
| BRCA | TCGA-A8-A07B-01A | TCGA-A8-A07B | RAPGEFL1|MAPT | RAPGEFL1 | MAPT | 17 | 17 | 1 | 1 | 3 | 4 | 4 | 0.077 | 38340601 | 44101322 | tier1 | In-frame | 14304 | non-validated | 0 |
| BRCA | TCGA-B6-A0IN-01A | TCGA-B6-A0IN | RARA|SKAP1 | RARA | SKAP1 | 17 | 17 | 1 | -1 | 232 | 136 | 116 | 0.19 | 38487648 | 46214699 | tier1 | Out-of-frame | 14334 | NA | 0 |
| BRCA | TCGA-AR-A24Z-01A | TCGA-AR-A24Z | RARS2|SMAP1 | RARS2 | SMAP1 | 6 | 6 | -1 | 1 | 3 | 6 | 4 | 0.23 | 88299640 | 71508360 | tier1 | In-frame | 14347 | non-validated | 0 |
| BRCA | TCGA-B6-A0RG-01A | TCGA-B6-A0RG | RASGRP1|LRRC4C | RASGRP1 | LRRC4C | 15 | 11 | -1 | -1 | 8 | 13 | 13 | 0.73 | 38852022 | 40162403 | tier2 | CDS-5UTR | 14377 | NA | 0 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | RASSF8|SLC47A2 | RASSF8 | SLC47A2 | 12 | 17 | 1 | -1 | 3 | 3 | 3 | 0.036 | 26112081 | 19584983 | tier1 | 5UTR-CDS | 14393 | NA | 0 |
| BRCA | TCGA-BH-A0H7-01A | TCGA-BH-A0H7 | RBFOX2|NTSR1 | RBFOX2 | NTSR1 | 22 | 20 | -1 | 1 | 9 | 2 | 2 | 1 | 36424288 | 61386037 | tier1 | In-frame | 14430 | NA | 0 |
| BRCA | TCGA-C8-A12W-01A | TCGA-C8-A12W | RBM23|SLC7A8 | RBM23 | SLC7A8 | 14 | 14 | -1 | -1 | 3 | 4 | 2 | 0.39 | 23388208 | 23635749 | tier1 | 5UTR-CDS | 14452 | NA | 0 |
| BRCA | TCGA-A7-A4SD-01A | TCGA-A7-A4SD | RECK|TMEM8B | RECK | TMEM8B | 9 | 9 | 1 | 1 | 2 | 2 | 1 | 0.65 | 36037095 | 35845972 | tier3 | Out-of-frame | 14528 | NA | 0 |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | RERE|GPR157 | RERE | GPR157 | 1 | 1 | -1 | -1 | 7 | 9 | 8 | 0.12 | 8716032 | 9171548 | tier1 | Out-of-frame | 14556 | NA | 0 |
| BRCA | TCGA-A2-A0D2-01A | TCGA-A2-A0D2 | REV3L|FYN | REV3L | FYN | 6 | 6 | -1 | -1 | 10 | 6 | 6 | 0.4 | 111702528 | 112101838 | tier1 | CDS-5UTR | 14574 | non-validated | 0 |
| BRCA | TCGA-A8-A07W-01A | TCGA-A8-A07W | RFWD2|XPR1 | RFWD2 | XPR1 | 1 | 1 | -1 | 1 | 3 | 5 | 4 | 3.2 | 176175708 | 180849212 | tier1 | In-frame | 14604 | NA | 0 |
| BRCA | TCGA-EW-A6SB-01A | TCGA-EW-A6SB | RHOA|C3orf43 | RHOA | C3orf43 | 3 | 3 | -1 | -1 | 29 | 25 | 22 | 0.45 | 49449253 | 196236540 | tier1 | 5UTR-CDS | 14648 | NA | 0 |
| BRCA | TCGA-A8-A09R-01A | TCGA-A8-A09R | RHOBTB2|PNOC | RHOBTB2 | PNOC | 8 | 8 | 1 | 1 | 2 | 2 | 2 | 2.8 | 22868201 | 28196557 | tier2 | Out-of-frame | 14655 | NA | 0 |
| BRCA | TCGA-BH-A18U-01A | TCGA-BH-A18U | RHOT1|FGFR1 | RHOT1 | FGFR1 | 17 | 8 | 1 | -1 | 5 | 4 | 4 | 2.4 | 30469748 | 38315052 | tier2 | CDS-5UTR | 14660 | non-validated | 0 |
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