Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-BH-A1F0-01A | TCGA-BH-A1F0 | PTPRF|GUCA2A | PTPRF | GUCA2A | 1 | 1 | 1 | -1 | 46 | 39 | 37 | 0.53 | 44019612 | 42629281 | tier1 | Out-of-frame | 13855 | NA | 0.37786 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | PTPRF|HIVEP3 | PTPRF | HIVEP3 | 1 | 1 | 1 | -1 | 5 | 10 | 8 | 0.28 | 44003948 | 42166666 | tier1 | 5UTR-5UTR | 13856 | NA | 0.38564 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | PTPRF|PDE4B | PTPRF | PDE4B | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 1.3 | 44019612 | 66378928 | tier2 | CDS-5UTR | 13858 | NA | 0.37796 |
| BRCA | TCGA-E9-A228-01A | TCGA-E9-A228 | PTPRG|FHIT | PTPRG | FHIT | 3 | 3 | 1 | -1 | 2 | 1 | 1 | 0.043 | 62063932 | 59908140 | tier3 | In-frame | 13861 | NA | 0.36774 |
| BRCA | TCGA-BH-A1F0-01A | TCGA-BH-A1F0 | PTPRK|C6orf203 | PTPRK | C6orf203 | 6 | 6 | -1 | 1 | 35 | 29 | 24 | 1.2 | 128841404 | 107365464 | tier1 | Out-of-frame | 13873 | NA | 0 |
| BRCA | TCGA-E9-A1NA-01A | TCGA-E9-A1NA | PTPRK|HECA | PTPRK | HECA | 6 | 6 | -1 | 1 | 253 | 172 | 163 | 0.36 | 128841404 | 139487421 | tier1 | In-frame | 13880 | NA | 0 |
| BRCA | TCGA-AO-A0JD-01A | TCGA-AO-A0JD | PTPRK|OXR1 | PTPRK | OXR1 | 6 | 8 | -1 | 1 | 4 | 1 | 1 | 0.29 | 128841404 | 107531171 | tier2 | Out-of-frame | 13882 | NA | 0 |
| BRCA | TCGA-BH-A18I-01A | TCGA-BH-A18I | PTPRK|PLN | PTPRK | PLN | 6 | 6 | -1 | 1 | 2 | 5 | 4 | 1.5 | 128643184 | 118879988 | tier3 | CDS-5UTR | 13884 | NA | 0 |
| BRCA | TCGA-A2-A0CY-01A | TCGA-A2-A0CY | PTPRK|SPARCL1 | PTPRK | SPARCL1 | 6 | 4 | -1 | -1 | 8 | 6 | 6 | 0.19 | 128505577 | 88420737 | tier1 | CDS-5UTR | 13897 | NA | 0 |
| BRCA | TCGA-A2-A04W-01A | TCGA-A2-A04W | PTPRK|STXBP6 | PTPRK | STXBP6 | 6 | 14 | -1 | -1 | 153 | 148 | 134 | 0.26 | 128505577 | 25326363 | tier1 | In-frame | 13898 | NA | 0 |
| BRCA | TCGA-E9-A3QA-01A | TCGA-E9-A3QA | PTPRM|KCTD1 | PTPRM | KCTD1 | 18 | 18 | 1 | -1 | 6 | 6 | 5 | 0.65 | 7926681 | 24039889 | tier1 | In-frame | 13900 | NA | 0 |
| BRCA | TCGA-AC-A62Y-01A | TCGA-AC-A62Y | PTPRN2|GALNT11 | PTPRN2 | GALNT11 | 7 | 7 | -1 | 1 | 2 | 2 | 2 | 5.6 | 157959623 | 151797883 | tier3 | In-frame | 13903 | NA | 0 |
| BRCA | TCGA-E2-A15F-01A | TCGA-E2-A15F | PTPRT|NCOA3 | PTPRT | NCOA3 | 20 | 20 | -1 | 1 | 86 | 100 | 87 | 0.002 | 40944363 | 46211927 | tier1 | CDS-5UTR | 13921 | NA | 0 |
| BRCA | TCGA-AC-A8OQ-01A | TCGA-AC-A8OQ | PTPRZ1|UBE2H | PTPRZ1 | UBE2H | 7 | 7 | 1 | -1 | 2 | 3 | 3 | 1.5 | 121668697 | 129479175 | tier2 | In-frame | 13932 | NA | 0 |
| BRCA | TCGA-AR-A1AT-01A | TCGA-AR-A1AT | PUM1|CSMD2 | PUM1 | CSMD2 | 1 | 1 | -1 | -1 | 4 | 1 | 1 | 0.22 | 31465237 | 34312597 | tier3 | Out-of-frame | 13938 | NA | 0 |
| BRCA | TCGA-C8-A12Q-01A | TCGA-C8-A12Q | PUM1|NKAIN1 | PUM1 | NKAIN1 | 1 | 1 | -1 | -1 | 3 | 3 | 2 | 0.5 | 31422980 | 31661034 | tier1 | In-frame | 13945 | non-validated | 0 |
| BRCA | TCGA-BH-A1F6-01A | TCGA-BH-A1F6 | PUM1|PTPRK | PUM1 | PTPRK | 1 | 6 | -1 | -1 | 35 | 14 | 13 | 0.097 | 31479841 | 128643455 | tier1 | In-frame | 13949 | NA | 0 |
| BRCA | TCGA-BH-A5J0-01A | TCGA-BH-A5J0 | RAB10|SDC1 | RAB10 | SDC1 | 2 | 2 | 1 | -1 | 10 | 4 | 4 | 1.4 | 26350820 | 20405185 | tier1 | In-frame | 14036 | NA | 0 |
| BRCA | TCGA-S3-A6ZH-01A | TCGA-S3-A6ZH | RAB11FIP1|UNC5D | RAB11FIP1 | UNC5D | 8 | 8 | -1 | 1 | 130 | 25 | 18 | 0.69 | 37734627 | 35647877 | tier1 | Out-of-frame | 14041 | NA | 0 |
| BRCA | TCGA-C8-A12V-01A | TCGA-C8-A12V | RAB27A|NEDD4 | RAB27A | NEDD4 | 15 | 15 | -1 | -1 | 6 | 5 | 4 | 0.89 | 55562363 | 56166206 | tier1 | 5UTR-CDS | 14062 | NA | 0 |
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