Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-XF-AAMQ-01A | TCGA-XF-AAMQ | SHANK2|ANO1 | SHANK2 | ANO1 | 11 | 11 | -1 | 1 | 4 | 10 | 10 | 1.5 | 70331419 | 70003053 | tier1 | Out-of-frame | 15847 | NA | 0 |
| BLCA | TCGA-XF-AAMQ-01A | TCGA-XF-AAMQ | SHROOM2|FRMPD4 | SHROOM2 | FRMPD4 | X | X | 1 | 1 | 2 | 4 | 4 | 0.015 | 9912953 | 12724945 | tier4 | In-frame | 15897 | NA | 0 |
| BLCA | TCGA-CF-A1HS-01A | TCGA-CF-A1HS | SHROOM2|REPS2 | SHROOM2 | REPS2 | X | X | 1 | 1 | 5 | 8 | 8 | 0.61 | 9880627 | 17121841 | tier1 | 5UTR-CDS | 15898 | NA | 0 |
| BLCA | TCGA-GU-A764-01A | TCGA-GU-A764 | SIPA1L3|GPI | SIPA1L3 | GPI | 19 | 19 | 1 | 1 | 32 | 25 | 24 | 0.38 | 38519796 | 34884153 | tier1 | 5UTR-CDS | 15951 | NA | 0 |
| BLCA | TCGA-XF-AAMX-01A | TCGA-XF-AAMX | SLC16A6|CA4 | SLC16A6 | CA4 | 17 | 17 | -1 | 1 | 2 | 1 | 1 | 0.54 | 66268780 | 58232675 | tier2 | In-frame | 16032 | NA | 0 |
| BLCA | TCGA-DK-AA71-01A | TCGA-DK-AA71 | SLC16A7|HOXC13 | SLC16A7 | HOXC13 | 12 | 12 | 1 | 1 | 2 | 1 | 1 | 1.4 | 59990017 | 54338784 | tier3 | 5UTR-CDS | 16036 | NA | 0 |
| BLCA | TCGA-UY-A78K-01A | TCGA-UY-A78K | SLC22A23|C6orf145 | SLC22A23 | C6orf145 | 6 | 6 | -1 | -1 | 2 | 2 | 1 | 1.8 | 3410422 | 3738382 | tier3 | In-frame | 16065 | NA | 0 |
| BLCA | TCGA-HQ-A2OE-01A | TCGA-HQ-A2OE | SLC22A23|ECHDC1 | SLC22A23 | ECHDC1 | 6 | 6 | -1 | -1 | 10 | 4 | 3 | 0.61 | 3324068 | 127652175 | tier1 | CDS-5UTR | 16067 | NA | 0 |
| BLCA | TCGA-CU-A0YN-01A | TCGA-CU-A0YN | SLC2A13|ZNF329 | SLC2A13 | ZNF329 | 12 | 19 | -1 | -1 | 2 | 2 | 1 | 0.84 | 40422103 | 58654028 | tier2 | CDS-5UTR | 16136 | NA | 0 |
| BLCA | TCGA-DK-A3X1-01A | TCGA-DK-A3X1 | SLC2A9|RAD51 | SLC2A9 | RAD51 | 4 | 15 | -1 | 1 | 5 | 4 | 4 | 1.9 | 10020599 | 40998375 | tier1 | In-frame | 16140 | NA | 0 |
| BLCA | TCGA-BL-A0C8-01B | TCGA-BL-A0C8 | SLC45A2|AMACR | SLC45A2 | AMACR | 5 | 5 | -1 | -1 | 2 | 2 | 1 | 0.12 | 33982341 | 34006004 | tier2 | In-frame | 16234 | non-validated | 0 |
| BLCA | TCGA-DK-A1AC-01A | TCGA-DK-A1AC | SLC4A4|TMPRSS11E | SLC4A4 | TMPRSS11E | 4 | 4 | 1 | 1 | 22 | 18 | 15 | 2 | 72102366 | 69327539 | tier1 | Out-of-frame | 16275 | NA | 0 |
| BLCA | TCGA-K4-A4AC-01A | TCGA-K4-A4AC | SLC7A1|CDX2 | SLC7A1 | CDX2 | 13 | 13 | -1 | -1 | 50 | 21 | 19 | 0.096 | 30127898 | 28539152 | tier1 | 5UTR-CDS | 16286 | NA | 0 |
| BLCA | TCGA-DK-A2I1-01A | TCGA-DK-A2I1 | SMG9|KCNN4 | SMG9 | KCNN4 | 19 | 19 | -1 | -1 | 22 | 17 | 16 | 2.3 | 44241749 | 44271241 | tier1 | CDS-3UTR | 16427 | NA | 0 |
| BLCA | TCGA-DK-A1A6-01A | TCGA-DK-A1A6 | SNRNP40|BAI2 | SNRNP40 | BAI2 | 1 | 1 | -1 | -1 | 3 | 6 | 6 | 0.025 | 31740718 | 32210332 | tier1 | Out-of-frame | 16497 | non-validated | 0 |
| BLCA | TCGA-HQ-A2OF-01A | TCGA-HQ-A2OF | SOCS7|MAPT | SOCS7 | MAPT | 17 | 17 | 1 | 1 | 53 | 44 | 41 | 0.52 | 36508915 | 44101322 | tier1 | Out-of-frame | 16580 | NA | 0 |
| BLCA | TCGA-DK-A2I1-01A | TCGA-DK-A2I1 | SPAG6|PLXDC2 | SPAG6 | PLXDC2 | 10 | 10 | 1 | 1 | 7 | 9 | 6 | 0.31 | 22657607 | 20568632 | tier1 | Out-of-frame | 16655 | NA | 0 |
| BLCA | TCGA-HQ-A2OE-01A | TCGA-HQ-A2OE | SSBP3|EDA | SSBP3 | EDA | 1 | X | -1 | 1 | 8 | 34 | 33 | 0.009 | 54867534 | 69080688 | tier1 | In-frame | 16909 | NA | 0 |
| BLCA | TCGA-KQ-A41P-01A | TCGA-KQ-A41P | STARD7|LRRN1 | STARD7 | LRRN1 | 2 | 3 | -1 | 1 | 3 | 3 | 3 | 1.6 | 96858980 | 3886048 | tier1 | CDS-5UTR | 17012 | NA | 0 |
| BLCA | TCGA-XF-A9SU-01A | TCGA-XF-A9SU | STIM1|RP11-150O12.1 | STIM1 | RP11-150O12.1 | 11 | 8 | 1 | -1 | 5 | 5 | 5 | 0.36 | 3877639 | 37279087 | tier1 | CDS-3UTR | 17041 | NA | 0 |
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