Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-CF-A27C-01A | TCGA-CF-A27C | POLE|ANKS1B | POLE | ANKS1B | 12 | 12 | -1 | -1 | 5 | 10 | 9 | 0.31 | 133263840 | 99225914 | tier1 | Out-of-frame | 13155 | non-validated | 0.37941 |
| BLCA | TCGA-E7-A85H-01A | TCGA-E7-A85H | PPAP2A|SLC38A9 | PPAP2A | SLC38A9 | 5 | 5 | -1 | -1 | 23 | 13 | 10 | 0.8 | 54830400 | 54993820 | tier1 | CDS-5UTR | 13213 | NA | 0.3538 |
| BLCA | TCGA-FD-A6TG-01A | TCGA-FD-A6TG | PPAP2A|SLC38A9 | PPAP2A | SLC38A9 | 5 | 5 | -1 | -1 | 5 | 17 | 16 | 0.8 | 54830400 | 54993820 | tier4 | CDS-5UTR | 13214 | NA | 0.3538 |
| BLCA | TCGA-4Z-AA80-01A | TCGA-4Z-AA80 | PPFIA1|DYNC2H1 | PPFIA1 | DYNC2H1 | 11 | 11 | 1 | 1 | 19 | 10 | 10 | 0.21 | 70118542 | 102984266 | tier1 | In-frame | 13251 | NA | 0.36472 |
| BLCA | TCGA-XF-AAMX-01A | TCGA-XF-AAMX | PPFIBP1|CACNA1C | PPFIBP1 | CACNA1C | 12 | 12 | 1 | 1 | 7 | 2 | 2 | 0.8 | 27677298 | 2690756 | tier1 | 5UTR-CDS | 13283 | NA | 0.37096 |
| BLCA | TCGA-XF-AAML-01A | TCGA-XF-AAML | PPME1|KANK1 | PPME1 | KANK1 | 11 | 9 | 1 | 1 | 5 | 6 | 6 | 0.66 | 73882567 | 676890 | tier1 | CDS-5UTR | 13329 | NA | 0.35184 |
| BLCA | TCGA-DK-AA6S-01A | TCGA-DK-AA6S | PPP1R10|FLOT1 | PPP1R10 | FLOT1 | 6 | 6 | -1 | -1 | 7 | 7 | 2 | 0.088 | 30584255 | 30698877 | tier1 | 5UTR-CDS | 13345 | NA | 0.36594 |
| BLCA | TCGA-4Z-AA86-01A | TCGA-4Z-AA86 | PRKCA|NF1 | PRKCA | NF1 | 17 | 17 | 1 | 1 | 7 | 5 | 5 | 0.72 | 64302245 | 29652838 | tier1 | Out-of-frame | 13543 | NA | 0.38806 |
| BLCA | TCGA-DK-A3X1-01A | TCGA-DK-A3X1 | PSCA|AVL9 | PSCA | AVL9 | 8 | 7 | 1 | 1 | 2 | 1 | 1 | 3.1 | 143764142 | 32620439 | tier3 | NA | 13695 | NA | 0.34425 |
| BLCA | TCGA-DK-A1AD-01A | TCGA-DK-A1AD | PTK2|UGT2A3 | PTK2 | UGT2A3 | 8 | 4 | -1 | -1 | 13 | 17 | 13 | 1.8 | 142011224 | 69798477 | tier1 | 5UTR-CDS | 13787 | NA | 0.38624 |
| BLCA | TCGA-KQ-A41Q-01A | TCGA-KQ-A41Q | PTK2|VPS13B | PTK2 | VPS13B | 8 | 8 | -1 | 1 | 3 | 7 | 6 | 0.059 | 141753329 | 100673582 | tier1 | In-frame | 13788 | NA | 0.38783 |
| BLCA | TCGA-ZF-AA4X-01A | TCGA-ZF-AA4X | PTK7|GNMT | PTK7 | GNMT | 6 | 6 | 1 | 1 | 2 | 1 | 1 | 0.56 | 43044305 | 42929950 | tier4 | Out-of-frame | 13795 | NA | 0.36906 |
| BLCA | TCGA-ZF-AA4T-01A | TCGA-ZF-AA4T | PTPN4|LCT | PTPN4 | LCT | 2 | 2 | 1 | -1 | 8 | 4 | 4 | 0.66 | 120567567 | 136590760 | tier1 | Out-of-frame | 13838 | NA | 0.36904 |
| BLCA | TCGA-ZF-A9RN-01A | TCGA-ZF-A9RN | PTPRK|POPDC3 | PTPRK | POPDC3 | 6 | 6 | -1 | -1 | 5 | 7 | 6 | 0.29 | 128718711 | 105610035 | tier1 | CDS-5UTR | 13885 | NA | 0 |
| BLCA | TCGA-DK-AA6P-01A | TCGA-DK-AA6P | PTPRK|SAMD3 | PTPRK | SAMD3 | 6 | 6 | -1 | -1 | 3 | 7 | 7 | 0.067 | 128718711 | 130505768 | tier1 | Out-of-frame | 13895 | NA | 0 |
| BLCA | TCGA-GC-A3RD-01A | TCGA-GC-A3RD | PTPRR|CHPT1 | PTPRR | CHPT1 | 12 | 12 | -1 | 1 | 13 | 10 | 7 | 0.87 | 71286459 | 102110506 | tier1 | Out-of-frame | 13907 | NA | 0 |
| BLCA | TCGA-UY-A8OB-01A | TCGA-UY-A8OB | PVRL2|IGSF23 | PVRL2 | IGSF23 | 19 | 19 | 1 | 1 | 69 | 54 | 46 | 1.2 | 45368917 | 45138701 | tier1 | Out-of-frame | 13974 | NA | 0 |
| BLCA | TCGA-FD-A3SP-01A | TCGA-FD-A3SP | PXDN|UTRN | PXDN | UTRN | 2 | 6 | -1 | 1 | 2 | 7 | 7 | 3 | 1635659 | 144665237 | tier3 | NA | 13981 | NA | 0 |
| BLCA | TCGA-FT-A3EE-01A | TCGA-FT-A3EE | RAB11FIP1|KCNU1 | RAB11FIP1 | KCNU1 | 8 | 8 | -1 | 1 | 66 | 54 | 51 | 1 | 37756589 | 36763226 | tier1 | In-frame | 14040 | non-validated | 0 |
| BLCA | TCGA-XF-AAMT-01A | TCGA-XF-AAMT | RAB35|GCN1L1 | RAB35 | GCN1L1 | 12 | 12 | -1 | -1 | 27 | 28 | 24 | 0.26 | 120546221 | 120587847 | tier1 | In-frame | 14076 | NA | 0 |
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