Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-GC-A3RB-01A | TCGA-GC-A3RB | OSBPL2|CDH4 | OSBPL2 | CDH4 | 20 | 20 | 1 | 1 | 9 | 24 | 23 | 5.7 | 60813653 | 60485478 | tier1 | 5UTR-CDS | 12073 | NA | 0.35951 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | P2RY6|MRPS35 | P2RY6 | MRPS35 | 11 | 12 | 1 | 1 | 5 | 4 | 3 | 100 | 72975694 | 27890472 | tier1 | 5UTR-CDS | 12132 | NA | 0.34768 |
| BLCA | TCGA-E7-A677-01A | TCGA-E7-A677 | P4HB|CLCN3 | P4HB | CLCN3 | 17 | 4 | -1 | 1 | 2 | 36 | 28 | 0.61 | 79801037 | 170623929 | tier3 | NA | 12139 | NA | 0.37133 |
| BLCA | TCGA-G2-A2ES-01A | TCGA-G2-A2ES | P4HB|ZNFX1 | P4HB | ZNFX1 | 17 | 20 | -1 | -1 | 2 | 7 | 6 | 0.19 | 79801042 | 47863418 | tier4 | NA | 12157 | NA | 0.36564 |
| BLCA | TCGA-ZF-A9RL-01A | TCGA-ZF-A9RL | PAG1|KIAA1429 | PAG1 | KIAA1429 | 8 | 8 | -1 | -1 | 7 | 3 | 3 | 0.084 | 81942231 | 95527179 | tier1 | 5UTR-CDS | 12191 | NA | 0.3626 |
| BLCA | TCGA-4Z-AA87-01A | TCGA-4Z-AA87 | PARD3|CUL2 | PARD3 | CUL2 | 10 | 10 | -1 | -1 | 7 | 1 | 1 | 0.26 | 34985246 | 35360267 | tier2 | CDS-5UTR | 12269 | NA | 0.38178 |
| BLCA | TCGA-DK-A3IT-01A | TCGA-DK-A3IT | PARL|ABCC5 | PARL | ABCC5 | 3 | 3 | -1 | -1 | 5 | 3 | 3 | 0.3 | 183602510 | 183655848 | tier1 | Out-of-frame | 12293 | NA | 0.34658 |
| BLCA | TCGA-E7-A7PW-01A | TCGA-E7-A7PW | PCBP2|ITGB7 | PCBP2 | ITGB7 | 12 | 12 | 1 | -1 | 29 | 554 | 506 | 1.1 | 53865591 | 53585420 | tier1 | CDS-3UTR | 12368 | NA | 0.37564 |
| BLCA | TCGA-FD-A62P-01A | TCGA-FD-A62P | PCNXL3|AP000769.1 | PCNXL3 | AP000769.1 | 11 | 11 | 1 | 1 | 4 | 1 | 1 | 2.1 | 65393525 | 65233556 | tier4 | NA | 12436 | NA | 0.32582 |
| BLCA | TCGA-GV-A40G-01A | TCGA-GV-A40G | PDXP|SLC17A9 | PDXP | SLC17A9 | 22 | 20 | 1 | 1 | 5 | 3 | 2 | 0.053 | 38055363 | 61588117 | tier1 | Out-of-frame | 12583 | NA | 0.3346 |
| BLCA | TCGA-4Z-AA84-01A | TCGA-4Z-AA84 | PFKP|CAMK2G | PFKP | CAMK2G | 10 | 10 | 1 | -1 | 4 | 6 | 6 | 4.7 | 3159038 | 75620647 | tier1 | Out-of-frame | 12647 | NA | 0.38254 |
| BLCA | TCGA-XF-A8HC-01A | TCGA-XF-A8HC | PIP4K2A|ITFG1 | PIP4K2A | ITFG1 | 10 | 16 | -1 | -1 | 2 | 1 | 1 | 1.6 | 22839588 | 47196575 | tier2 | Out-of-frame | 12863 | NA | 0.35793 |
| BLCA | TCGA-GU-A42Q-01A | TCGA-GU-A42Q | PIR|TMEM27 | PIR | TMEM27 | X | X | -1 | -1 | 25 | 25 | 22 | 1 | 15509285 | 15682518 | tier1 | Out-of-frame | 12882 | NA | 0.34276 |
| BLCA | TCGA-G2-AA3F-01A | TCGA-G2-AA3F | PKP2|AC013461.1 | PKP2 | AC013461.1 | 12 | 2 | -1 | 1 | 4 | 7 | 6 | 0.32 | 33021861 | 174068524 | tier1 | In-frame | 12927 | NA | 0.36526 |
| BLCA | TCGA-GV-A40E-01A | TCGA-GV-A40E | PLAGL1|BAI3 | PLAGL1 | BAI3 | 6 | 6 | -1 | 1 | 5 | 1 | 1 | 1.4 | 144290044 | 70034764 | tier4 | 5UTR-CDS | 12944 | NA | 0.37422 |
| BLCA | TCGA-DK-A6B2-01A | TCGA-DK-A6B2 | PLCH1|MUC13 | PLCH1 | MUC13 | 3 | 3 | -1 | -1 | 2 | 3 | 3 | 2.3 | 155282704 | 124625589 | tier3 | CDS-3UTR | 12973 | NA | 0.35634 |
| BLCA | TCGA-FD-A3SR-01A | TCGA-FD-A3SR | PLD3|TYK2 | PLD3 | TYK2 | 19 | 19 | 1 | -1 | 2 | 27 | 19 | 0.34 | 40884390 | 10491352 | tier3 | 3UTR-5UTR | 12983 | NA | 0.37384 |
| BLCA | TCGA-2F-A9KW-01A | TCGA-2F-A9KW | PLEKHH1|MPP5 | PLEKHH1 | MPP5 | 14 | 14 | 1 | 1 | 5 | 1 | 1 | 4.5 | 68035933 | 67759228 | tier2 | In-frame | 13029 | NA | 0.36595 |
| BLCA | TCGA-GD-A3OS-01A | TCGA-GD-A3OS | PLXDC2|VAMP5 | PLXDC2 | VAMP5 | 10 | 2 | 1 | 1 | 10 | 7 | 6 | 0.074 | 20106120 | 85818848 | tier1 | Out-of-frame | 13061 | NA | 0.34831 |
| BLCA | TCGA-CF-A1HS-01A | TCGA-CF-A1HS | PLXNA1|CHCHD6 | PLXNA1 | CHCHD6 | 3 | 3 | 1 | 1 | 62 | 32 | 32 | 0.37 | 126708630 | 126633523 | tier1 | In-frame | 13062 | NA | 0.36921 |
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