Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-BT-A20W-01A | TCGA-BT-A20W | MPP5|GPHN | MPP5 | GPHN | 14 | 14 | 1 | 1 | 2 | 1 | 1 | 0.24 | 67770316 | 67576857 | tier4 | In-frame | 10614 | NA | 0.36903 |
| BLCA | TCGA-FD-A3N6-01A | TCGA-FD-A3N6 | MPP5|GPHN | MPP5 | GPHN | 14 | 14 | 1 | 1 | 7 | 9 | 8 | 0.24 | 67779427 | 67646295 | tier1 | Out-of-frame | 10616 | validated | 0.36903 |
| BLCA | TCGA-FJ-A871-01A | TCGA-FJ-A871 | MTAP|LINGO2 | MTAP | LINGO2 | 9 | 9 | 1 | -1 | 3 | 2 | 1 | 0.19 | 21838009 | 27950704 | tier2 | CDS-5UTR | 10770 | NA | 0.33836 |
| BLCA | TCGA-DK-A2I6-01A | TCGA-DK-A2I6 | MTSS1|ERBB2 | MTSS1 | ERBB2 | 8 | 17 | -1 | 1 | 13 | 10 | 10 | 0.85 | 125740125 | 37863243 | tier1 | Out-of-frame | 10841 | NA | 0.38588 |
| BLCA | TCGA-FD-A3SL-01A | TCGA-FD-A3SL | MXRA8|DDX27 | MXRA8 | DDX27 | 1 | 20 | -1 | 1 | 2 | 10 | 4 | 0.86 | 1288072 | 47849303 | tier3 | NA | 10872 | NA | 0.36059 |
| BLCA | TCGA-XF-AAMZ-01A | TCGA-XF-AAMZ | MYO10|PFDN2 | MYO10 | PFDN2 | 5 | 1 | -1 | -1 | 98 | 55 | 50 | 0.67 | 16711017 | 161072165 | tier1 | In-frame | 10943 | NA | 0.37256 |
| BLCA | TCGA-ZF-AA4T-01A | TCGA-ZF-AA4T | MYO5B|DCC | MYO5B | DCC | 18 | 18 | -1 | 1 | 3 | 2 | 2 | 0.27 | 47721137 | 50278424 | tier1 | Out-of-frame | 10992 | NA | 0.37979 |
| BLCA | TCGA-DK-A3IS-01A | TCGA-DK-A3IS | NCOA3|DUSP15 | NCOA3 | DUSP15 | 20 | 20 | 1 | -1 | 5 | 2 | 2 | 1.7 | 46130763 | 30454956 | tier1 | 5UTR-5UTR | 11194 | NA | 0.37472 |
| BLCA | TCGA-GD-A2C5-01A | TCGA-GD-A2C5 | NEDD4|GABRA5 | NEDD4 | GABRA5 | 15 | 15 | -1 | 1 | 8 | 8 | 6 | 0.84 | 56285709 | 27113876 | tier1 | CDS-5UTR | 11331 | non-validated | 0.37849 |
| BLCA | TCGA-GC-A4ZW-01A | TCGA-GC-A4ZW | NEIL2|TTC7B | NEIL2 | TTC7B | 8 | 14 | 1 | -1 | 3 | 1 | 1 | 1.2 | 11637459 | 91146879 | tier2 | In-frame | 11350 | NA | 0.3571 |
| BLCA | TCGA-K4-A3WU-01B | TCGA-K4-A3WU | NEK7|CADM3 | NEK7 | CADM3 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 0.55 | 198233365 | 159161726 | tier2 | Out-of-frame | 11359 | NA | 0.36695 |
| BLCA | TCGA-GV-A40E-01A | TCGA-GV-A40E | NHSL1|SLCO2B1 | NHSL1 | SLCO2B1 | 6 | 11 | -1 | 1 | 8 | 5 | 4 | 1.2 | 138763120 | 74873700 | tier1 | In-frame | 11540 | NA | 0.34523 |
| BLCA | TCGA-DK-A3IK-01A | TCGA-DK-A3IK | NOS1AP|LRRC52 | NOS1AP | LRRC52 | 1 | 1 | 1 | 1 | 6 | 7 | 7 | 0.27 | 162124266 | 165532742 | tier1 | Out-of-frame | 11656 | NA | 0.35908 |
| BLCA | TCGA-CF-A3MI-01A | TCGA-CF-A3MI | NRG1|KRT78 | NRG1 | KRT78 | 8 | 12 | 1 | -1 | 2 | 5 | 5 | 0.081 | 32406344 | 53233768 | tier2 | Out-of-frame | 11745 | NA | 0.37941 |
| BLCA | TCGA-BT-A20T-01A | TCGA-BT-A20T | NSD1|FAT2 | NSD1 | FAT2 | 5 | 5 | 1 | -1 | 2 | 2 | 1 | 0.55 | 176675325 | 150892167 | tier2 | In-frame | 11776 | non-validated | 0.37553 |
| BLCA | TCGA-DK-AA6P-01A | TCGA-DK-AA6P | NUP107|CPM | NUP107 | CPM | 12 | 12 | 1 | -1 | 2 | 2 | 2 | 0.071 | 69115932 | 69279669 | tier3 | Out-of-frame | 11905 | NA | 0.35649 |
| BLCA | TCGA-G2-A3VY-01A | TCGA-G2-A3VY | NUP133|CDH6 | NUP133 | CDH6 | 1 | 5 | -1 | 1 | 13 | 3 | 2 | 1.3 | 229625702 | 31299571 | tier1 | Out-of-frame | 11908 | NA | 0.36053 |
| BLCA | TCGA-2F-A9KP-01A | TCGA-2F-A9KP | NUP188|TMEM8C | NUP188 | TMEM8C | 9 | 9 | 1 | -1 | 74 | 21 | 20 | 0.047 | 131768647 | 136379907 | tier1 | In-frame | 11927 | NA | 0.33467 |
| BLCA | TCGA-2F-A9KP-01A | TCGA-2F-A9KP | OCLN|CCNB1 | OCLN | CCNB1 | 5 | 5 | 1 | 1 | 16 | 21 | 19 | 0.5 | 68809936 | 68467097 | tier1 | In-frame | 12000 | NA | 0.37707 |
| BLCA | TCGA-FD-A62S-01A | TCGA-FD-A62S | ODZ4|DPP3 | ODZ4 | DPP3 | 11 | 11 | -1 | 1 | 3 | 4 | 4 | 1.5 | 79151553 | 66272083 | tier1 | 5UTR-CDS | 12010 | NA | 0.35722 |
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