Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 13 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-DK-A3IK-01A | TCGA-DK-A3IK | LTBP1|PLB1 | LTBP1 | PLB1 | 2 | 2 | 1 | 1 | 10 | 9 | 8 | 0.008 | 33413918 | 28771727 | tier1 | In-frame | 9650 | NA | 0.37289 |
| BLCA | TCGA-K4-A83P-01A | TCGA-K4-A83P | LUC7L|CORIN | LUC7L | CORIN | 16 | 4 | -1 | -1 | 7 | 6 | 6 | 0.03 | 249061 | 47667280 | tier1 | Out-of-frame | 9673 | NA | 0.35965 |
| BLCA | TCGA-BT-A20W-01A | TCGA-BT-A20W | MACROD1|NRXN2 | MACROD1 | NRXN2 | 11 | 11 | -1 | -1 | 3 | 3 | 3 | 0.98 | 63918711 | 64375554 | tier1 | In-frame | 9738 | NA | 0.36823 |
| BLCA | TCGA-FD-A43N-01A | TCGA-FD-A43N | MADD|PIK3C2A | MADD | PIK3C2A | 11 | 11 | 1 | -1 | 3 | 2 | 2 | 0.51 | 47333393 | 17158172 | tier1 | In-frame | 9753 | NA | 0.36026 |
| BLCA | TCGA-ZF-AA5P-01A | TCGA-ZF-AA5P | MAN1A1|IFNGR2 | MAN1A1 | IFNGR2 | 6 | 21 | -1 | 1 | 2 | 5 | 5 | 0.032 | 119623153 | 34851105 | tier3 | NA | 9799 | NA | 0.36345 |
| BLCA | TCGA-UY-A78K-01A | TCGA-UY-A78K | MAP3K1|OR4N2 | MAP3K1 | OR4N2 | 5 | 14 | 1 | 1 | 4 | 5 | 4 | 2.8 | 56155742 | 20201528 | tier1 | NA | 9848 | NA | 0.37794 |
| BLCA | TCGA-4Z-AA7Q-01A | TCGA-4Z-AA7Q | MAP4|NME6 | MAP4 | NME6 | 3 | 3 | -1 | -1 | 3 | 2 | 2 | 0.18 | 48130263 | 48342124 | tier1 | 5UTR-5UTR | 9890 | NA | 0.36234 |
| BLCA | TCGA-4Z-AA7Q-01A | TCGA-4Z-AA7Q | MAP4|SPINK8 | MAP4 | SPINK8 | 3 | 3 | -1 | -1 | 44 | 34 | 33 | 1.7 | 48130263 | 48351436 | tier1 | 5UTR-CDS | 9897 | NA | 0.36249 |
| BLCA | TCGA-FD-A3SN-01A | TCGA-FD-A3SN | MAPKAP1|AP1G2 | MAPKAP1 | AP1G2 | 9 | 14 | -1 | -1 | 2 | 1 | 1 | 1.4 | 128200748 | 24037279 | tier3 | NA | 9957 | NA | 0.36264 |
| BLCA | TCGA-BT-A20X-01A | TCGA-BT-A20X | MARCH9|KCNC2 | MARCH9 | KCNC2 | 12 | 12 | 1 | -1 | 5 | 2 | 2 | 0.6 | 58150867 | 75445097 | tier1 | In-frame | 9991 | NA | 0 |
| BLCA | TCGA-ZF-AA51-01A | TCGA-ZF-AA51 | MARK2|C11orf84 | MARK2 | C11orf84 | 11 | 11 | 1 | 1 | 9 | 10 | 10 | 0.097 | 63607032 | 63585277 | tier1 | Out-of-frame | 10000 | NA | 0 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | MARK3|BAG5 | MARK3 | BAG5 | 14 | 14 | 1 | -1 | 4 | 3 | 2 | 2.2 | 103934523 | 104027529 | tier1 | CDS-5UTR | 10004 | NA | 0.38136 |
| BLCA | TCGA-XF-AAMT-01A | TCGA-XF-AAMT | MAST4|ST8SIA4 | MAST4 | ST8SIA4 | 5 | 5 | 1 | -1 | 4 | 6 | 6 | 1.4 | 66429474 | 100192100 | tier1 | Out-of-frame | 10031 | NA | 0.35325 |
| BLCA | TCGA-4Z-AA7R-01A | TCGA-4Z-AA7R | MCM3|GPR110 | MCM3 | GPR110 | 6 | 6 | -1 | -1 | 3 | 5 | 3 | 0.18 | 52146843 | 46991953 | tier1 | Out-of-frame | 10096 | NA | 0.37722 |
| BLCA | TCGA-4Z-AA7M-01A | TCGA-4Z-AA7M | MELK|CNTFR | MELK | CNTFR | 9 | 9 | 1 | -1 | 4 | 2 | 2 | 0.6 | 36573004 | 34581203 | tier1 | 5UTR-5UTR | 10249 | NA | 0.38267 |
| BLCA | TCGA-DK-A3X2-01A | TCGA-DK-A3X2 | MFI2|IGSF11 | MFI2 | IGSF11 | 3 | 3 | -1 | -1 | 3 | 2 | 1 | 0.5 | 196730772 | 118624565 | tier3 | In-frame | 10286 | NA | 0.34916 |
| BLCA | TCGA-GV-A40E-01A | TCGA-GV-A40E | MGAT5B|CYP11A1 | MGAT5B | CYP11A1 | 17 | 15 | 1 | -1 | 11 | 17 | 14 | 0.025 | 74878380 | 74640396 | tier1 | In-frame | 10319 | NA | 0.35692 |
| BLCA | TCGA-FJ-A3ZE-01A | TCGA-FJ-A3ZE | MIB1|CABYR | MIB1 | CABYR | 18 | 18 | 1 | 1 | 23 | 19 | 17 | 0.15 | 19383975 | 21735665 | tier1 | Out-of-frame | 10330 | NA | 0.37147 |
| BLCA | TCGA-GC-A3YS-01A | TCGA-GC-A3YS | MIPOL1|NLGN1 | MIPOL1 | NLGN1 | 14 | 3 | 1 | 1 | 3 | 2 | 2 | 0.61 | 37777724 | 173993105 | tier1 | Out-of-frame | 10383 | NA | 0.35553 |
| BLCA | TCGA-GC-A3RB-01A | TCGA-GC-A3RB | MMP15|CDH5 | MMP15 | CDH5 | 16 | 16 | 1 | 1 | 2 | 10 | 10 | 0.015 | 58060416 | 66413222 | tier2 | CDS-5UTR | 10548 | NA | 0.37867 |
|
Showing page 13 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.