Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-K4-A6MB-01A | TCGA-K4-A6MB | GRID1|GLUD1 | GRID1 | GLUD1 | 10 | 10 | -1 | -1 | 4 | 16 | 13 | 0.63 | 88123698 | 88836413 | tier1 | In-frame | 7444 | NA | 0.36475 |
| BLCA | TCGA-FD-A3SM-01A | TCGA-FD-A3SM | GSN|HSPA8 | GSN | HSPA8 | 9 | 11 | 1 | -1 | 2 | 1 | 1 | 0.92 | 124095016 | 122933938 | tier3 | NA | 7499 | NA | 0.38332 |
| BLCA | TCGA-FD-A3B6-01A | TCGA-FD-A3B6 | HEATR2|ZNRF3 | HEATR2 | ZNRF3 | 7 | 22 | 1 | 1 | 3 | 2 | 2 | 0.83 | 769484 | 29442704 | tier1 | In-frame | 7659 | NA | 0.36319 |
| BLCA | TCGA-BT-A2LA-01A | TCGA-BT-A2LA | HELZ|ABCA10 | HELZ | ABCA10 | 17 | 17 | -1 | -1 | 3 | 2 | 2 | 0.021 | 65239900 | 67223426 | tier4 | 5UTR-5UTR | 7692 | non-validated | 0.35482 |
| BLCA | TCGA-GC-A3WC-01A | TCGA-GC-A3WC | HLA-B|EIF2AK2 | HLA-B | EIF2AK2 | 6 | 2 | -1 | -1 | 2 | 48 | 27 | 0.55 | 31321649 | 37342384 | tier4 | NA | 7821 | NA | 0.38827 |
| BLCA | TCGA-DK-A6B2-01A | TCGA-DK-A6B2 | HLA-C|EIF2AK2 | HLA-C | EIF2AK2 | 6 | 2 | -1 | -1 | 2 | 126 | 86 | 7.1 | 31236528 | 37342384 | tier3 | NA | 7829 | NA | 0.38701 |
| BLCA | TCGA-E7-A7DV-01A | TCGA-E7-A7DV | HRH1|TSEN2 | HRH1 | TSEN2 | 3 | 3 | 1 | 1 | 3 | 2 | 2 | 0.45 | 11196240 | 12531283 | tier1 | 5UTR-5UTR | 7959 | NA | 0.35917 |
| BLCA | TCGA-BT-A2LD-01A | TCGA-BT-A2LD | HS6ST2|NPFFR2 | HS6ST2 | NPFFR2 | X | 4 | -1 | 1 | 2 | 2 | 2 | 1.1 | 132090836 | 73003757 | tier2 | Out-of-frame | 7966 | NA | 0.35211 |
| BLCA | TCGA-ZF-A9RL-01A | TCGA-ZF-A9RL | IFT52|MXRA8 | IFT52 | MXRA8 | 20 | 1 | 1 | -1 | 7 | 6 | 6 | 0.57 | 42225162 | 1292084 | tier1 | Out-of-frame | 8073 | NA | 0.34417 |
| BLCA | TCGA-FD-A3SR-01A | TCGA-FD-A3SR | IKBKB|UNC5D | IKBKB | UNC5D | 8 | 8 | 1 | 1 | 25 | 11 | 10 | 0.95 | 42129723 | 35406810 | tier1 | Out-of-frame | 8147 | NA | 0.38612 |
| BLCA | TCGA-E7-A4IJ-01A | TCGA-E7-A4IJ | IL22RA1|C1orf201 | IL22RA1 | C1orf201 | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 0.97 | 24460701 | 24718169 | tier2 | Out-of-frame | 8182 | NA | 0 |
| BLCA | TCGA-GU-A42P-01A | TCGA-GU-A42P | IL4R|NSMCE1 | IL4R | NSMCE1 | 16 | 16 | 1 | -1 | 5 | 3 | 3 | 1.6 | 27357939 | 27268902 | tier1 | CDS-5UTR | 8201 | NA | 0.37656 |
| BLCA | TCGA-CU-A3KJ-01A | TCGA-CU-A3KJ | ITGAX|PHKG2 | ITGAX | PHKG2 | 16 | 16 | 1 | 1 | 2 | 3 | 3 | 0.032 | 31388586 | 30764715 | tier3 | In-frame | 8394 | NA | 0.37099 |
| BLCA | TCGA-BT-A20W-01A | TCGA-BT-A20W | ITGB6|RBMS1 | ITGB6 | RBMS1 | 2 | 2 | -1 | -1 | 2 | 4 | 4 | 0.71 | 161051880 | 161174738 | tier3 | In-frame | 8411 | NA | 0.37156 |
| BLCA | TCGA-DK-A2I6-01A | TCGA-DK-A2I6 | ITGB6|RBMS1 | ITGB6 | RBMS1 | 2 | 2 | -1 | -1 | 8 | 26 | 21 | 0.71 | 160964190 | 161141555 | tier1 | In-frame | 8414 | NA | 0.37156 |
| BLCA | TCGA-ZF-A9R1-01A | TCGA-ZF-A9R1 | ITGB6|RBMS1 | ITGB6 | RBMS1 | 2 | 2 | -1 | -1 | 3 | 11 | 10 | 0.71 | 160998493 | 161143595 | tier1 | Out-of-frame | 8415 | NA | 0.37156 |
| BLCA | TCGA-ZF-AA51-01A | TCGA-ZF-AA51 | ITGB6|RBMS1 | ITGB6 | RBMS1 | 2 | 2 | -1 | -1 | 2 | 15 | 13 | 0.71 | 161025723 | 161133894 | tier2 | In-frame | 8416 | NA | 0.37156 |
| BLCA | TCGA-FD-A6TG-01A | TCGA-FD-A6TG | JARID2|SGCZ | JARID2 | SGCZ | 6 | 8 | 1 | -1 | 3 | 1 | 1 | 1.6 | 15246815 | 14022211 | tier4 | Out-of-frame | 8486 | NA | 0.3632 |
| BLCA | TCGA-ZF-A9RD-01A | TCGA-ZF-A9RD | JUP|ACLY | JUP | ACLY | 17 | 17 | -1 | -1 | 25 | 20 | 18 | 6.6 | 39942840 | 40035177 | tier1 | 5UTR-CDS | 8506 | NA | 0.37499 |
| BLCA | TCGA-DK-A3IQ-01A | TCGA-DK-A3IQ | KANK1|NFX1 | KANK1 | NFX1 | 9 | 9 | 1 | 1 | 2 | 1 | 1 | 0.093 | 707247 | 33338508 | tier2 | 5UTR-CDS | 8517 | NA | 0.36627 |
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