Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-FD-A5BT-01A | TCGA-FD-A5BT | FNDC3B|EMP3 | FNDC3B | EMP3 | 3 | 19 | 1 | 1 | 75 | 53 | 50 | 0.8 | 171969331 | 48832609 | tier1 | In-frame | 6606 | NA | 0.35207 |
| BLCA | TCGA-BL-A0C8-01A | TCGA-BL-A0C8 | FREM1|SLAMF7 | FREM1 | SLAMF7 | 9 | 1 | -1 | 1 | 2 | 3 | 3 | 0.079 | 14851282 | 160717984 | tier2 | Out-of-frame | 6712 | validated | 0.34288 |
| BLCA | TCGA-CF-A1HS-01A | TCGA-CF-A1HS | FRMD6|RTN4 | FRMD6 | RTN4 | 14 | 2 | 1 | -1 | 8 | 6 | 6 | 0.019 | 52037128 | 55214834 | tier1 | 5UTR-CDS | 6730 | NA | 0.36755 |
| BLCA | TCGA-ZF-A9RC-01A | TCGA-ZF-A9RC | FRS2|BEST3 | FRS2 | BEST3 | 12 | 12 | 1 | -1 | 18 | 6 | 3 | 0.02 | 69925836 | 70037567 | tier1 | 5UTR-CDS | 6742 | NA | 0.37743 |
| BLCA | TCGA-GC-A3RD-01A | TCGA-GC-A3RD | FRS2|DRAM1 | FRS2 | DRAM1 | 12 | 12 | 1 | 1 | 64 | 294 | 160 | 0.86 | 69925836 | 102291641 | tier1 | 5UTR-CDS | 6750 | NA | 0.37412 |
| BLCA | TCGA-S5-A6DX-01A | TCGA-S5-A6DX | FRS2|LACRT | FRS2 | LACRT | 12 | 12 | 1 | -1 | 34 | 10 | 10 | 1.6 | 69864310 | 55027017 | tier1 | 5UTR-CDS | 6759 | NA | 0.37937 |
| BLCA | TCGA-GC-A3RD-01A | TCGA-GC-A3RD | FRS2|NUP107 | FRS2 | NUP107 | 12 | 12 | 1 | 1 | 220 | 22 | 13 | 0.26 | 69925836 | 69135593 | tier1 | 5UTR-CDS | 6770 | NA | 0.37848 |
| BLCA | TCGA-FD-A6TG-01A | TCGA-FD-A6TG | FRS2|SCAF11 | FRS2 | SCAF11 | 12 | 12 | 1 | -1 | 2 | 1 | 1 | 0.031 | 69864310 | 46357971 | tier3 | 5UTR-5UTR | 6786 | NA | 0.37412 |
| BLCA | TCGA-E7-A85H-01A | TCGA-E7-A85H | FRYL|NKAIN3 | FRYL | NKAIN3 | 4 | 8 | -1 | 1 | 2 | 2 | 1 | 0.83 | 48782095 | 63492098 | tier4 | 5UTR-CDS | 6798 | NA | 0.35016 |
| BLCA | TCGA-K4-A3WU-01B | TCGA-K4-A3WU | FSTL4|SLC22A4 | FSTL4 | SLC22A4 | 5 | 5 | -1 | 1 | 2 | 3 | 3 | 5.2 | 132902877 | 131679453 | tier3 | Out-of-frame | 6812 | NA | 0.35942 |
| BLCA | TCGA-DK-A3X2-01A | TCGA-DK-A3X2 | FXYD3|TARM1 | FXYD3 | TARM1 | 19 | 19 | 1 | -1 | 120 | 39 | 21 | 100 | 35610320 | 54579170 | tier1 | In-frame | 6846 | NA | 0.34533 |
| BLCA | TCGA-LC-A66R-01A | TCGA-LC-A66R | FZD6|DPYS | FZD6 | DPYS | 8 | 8 | 1 | -1 | 41 | 47 | 40 | 1 | 104312512 | 105405219 | tier1 | Out-of-frame | 6861 | NA | 0.35081 |
| BLCA | TCGA-FD-A3SL-01A | TCGA-FD-A3SL | GNAS|SUPT16H | GNAS | SUPT16H | 20 | 14 | 1 | -1 | 3 | 52 | 14 | 0.62 | 57486241 | 21829491 | tier1 | 3UTR-CDS | 7204 | NA | 0.38489 |
| BLCA | TCGA-GV-A3JZ-01A | TCGA-GV-A3JZ | GPR110|MEP1A | GPR110 | MEP1A | 6 | 6 | -1 | 1 | 8 | 3 | 3 | 0.046 | 47009927 | 46800811 | tier1 | 5UTR-CDS | 7351 | NA | 0.36591 |
| BLCA | TCGA-DK-AA6S-01A | TCGA-DK-AA6S | GPR110|TNFRSF21 | GPR110 | TNFRSF21 | 6 | 6 | -1 | -1 | 181 | 201 | 199 | 2.4 | 46989694 | 47254331 | tier1 | In-frame | 7352 | NA | 0.35842 |
| BLCA | TCGA-DK-AA6U-01A | TCGA-DK-AA6U | GPR110|TNFRSF21 | GPR110 | TNFRSF21 | 6 | 6 | -1 | -1 | 17 | 12 | 11 | 2.4 | 47009927 | 47202634 | tier1 | 5UTR-CDS | 7353 | NA | 0.35842 |
| BLCA | TCGA-FD-A62P-01A | TCGA-FD-A62P | GPR110|TNFRSF21 | GPR110 | TNFRSF21 | 6 | 6 | -1 | -1 | 24 | 7 | 7 | 2.4 | 46984353 | 47221257 | tier1 | In-frame | 7355 | NA | 0.35842 |
| BLCA | TCGA-XF-A9SK-01A | TCGA-XF-A9SK | GRB7|CD300E | GRB7 | CD300E | 17 | 17 | 1 | -1 | 2 | 1 | 1 | 3.4 | 37901237 | 72610172 | tier3 | Out-of-frame | 7413 | NA | 0.38261 |
| BLCA | TCGA-GU-AATP-01A | TCGA-GU-AATP | GRB7|ERBB2 | GRB7 | ERBB2 | 17 | 17 | 1 | 1 | 6 | 5 | 5 | 0.031 | 37894386 | 37844949 | tier1 | 5UTR-5UTR | 7415 | NA | 0.389 |
| BLCA | TCGA-CU-A0YR-01A | TCGA-CU-A0YR | GRB7|PLXDC1 | GRB7 | PLXDC1 | 17 | 17 | 1 | -1 | 8 | 4 | 4 | 0.041 | 37900460 | 37224212 | tier1 | In-frame | 7420 | NA | 0.38121 |
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