Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 6 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-GV-A3QI-01A | TCGA-GV-A3QI | ASPH|CLCN3 | ASPH | CLCN3 | 8 | 4 | -1 | 1 | 2 | 9 | 4 | 1.3 | 62537096 | 170623929 | tier4 | NA | 1538 | NA | 0.36569 |
| BLCA | TCGA-YC-A89H-01A | TCGA-YC-A89H | ASPH|TACC1 | ASPH | TACC1 | 8 | 8 | -1 | 1 | 7 | 1 | 1 | 0.12 | 62531537 | 38599869 | tier2 | CDS-5UTR | 1543 | NA | 0.36377 |
| BLCA | TCGA-DK-A3IK-01A | TCGA-DK-A3IK | ATG2B|SLC22A17 | ATG2B | SLC22A17 | 14 | 14 | -1 | -1 | 30 | 18 | 15 | 0.29 | 96782870 | 23816145 | tier1 | Out-of-frame | 1622 | NA | 0.34585 |
| BLCA | TCGA-G2-AA3D-01A | TCGA-G2-AA3D | ATP11A|SPACA7 | ATP11A | SPACA7 | 13 | 13 | 1 | 1 | 3 | 5 | 5 | 0.88 | 113490565 | 113086758 | tier1 | In-frame | 1671 | NA | 0.33935 |
| BLCA | TCGA-FD-A62P-01A | TCGA-FD-A62P | ATP6AP1|OPN1LW | ATP6AP1 | OPN1LW | X | X | 1 | 1 | 10 | 6 | 4 | 0.33 | 153657520 | 153421769 | tier1 | In-frame | 1743 | NA | 0.36829 |
| BLCA | TCGA-BT-A20U-01A | TCGA-BT-A20U | ATP6V0A1|STAT5A | ATP6V0A1 | STAT5A | 17 | 17 | 1 | 1 | 18 | 32 | 29 | 0.63 | 40610981 | 40440074 | tier1 | 5UTR-5UTR | 1748 | NA | 0.3749 |
| BLCA | TCGA-DK-AA6P-01A | TCGA-DK-AA6P | ATP8A2|ALG5 | ATP8A2 | ALG5 | 13 | 13 | 1 | -1 | 11 | 7 | 7 | 0.003 | 26436546 | 37559877 | tier1 | In-frame | 1768 | NA | 0.3413 |
| BLCA | TCGA-XF-A8HD-01A | TCGA-XF-A8HD | ATP9A|EPB41L1 | ATP9A | EPB41L1 | 20 | 20 | -1 | 1 | 2 | 3 | 2 | 0.057 | 50329505 | 34763473 | tier4 | CDS-5UTR | 1774 | NA | 0.36888 |
| BLCA | TCGA-ZF-A9RE-01A | TCGA-ZF-A9RE | BPTF|TTYH2 | BPTF | TTYH2 | 17 | 17 | 1 | 1 | 3 | 6 | 6 | 1.5 | 65822453 | 72227027 | tier1 | Out-of-frame | 2174 | NA | 0.35925 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | C14orf93|TIMM9 | C14orf93 | TIMM9 | 14 | 14 | -1 | -1 | 2 | 11 | 11 | 1.4 | 23479310 | 58878689 | tier2 | 5UTR-5UTR | 2466 | NA | 0 |
| BLCA | TCGA-G2-A2EF-01A | TCGA-G2-A2EF | C17orf42|CADM2 | C17orf42 | CADM2 | 17 | 3 | -1 | 1 | 3 | 2 | 2 | 2.2 | 29227431 | 85932441 | tier1 | Out-of-frame | 2505 | NA | 0 |
| BLCA | TCGA-ZF-AA5H-01A | TCGA-ZF-AA5H | C19orf42|CACNA1A | C19orf42 | CACNA1A | 19 | 19 | -1 | -1 | 22 | 25 | 24 | 3 | 16770206 | 13366073 | tier1 | Out-of-frame | 2576 | NA | 0 |
| BLCA | TCGA-DK-A3IN-01A | TCGA-DK-A3IN | CABIN1|GRIN2A | CABIN1 | GRIN2A | 22 | 16 | 1 | -1 | 5 | 5 | 5 | 0.32 | 24515665 | 9984957 | tier1 | Out-of-frame | 2842 | NA | 0.38167 |
| BLCA | TCGA-XF-AAMY-01A | TCGA-XF-AAMY | CACNA1I|FBXW5 | CACNA1I | FBXW5 | 22 | 9 | 1 | -1 | 17 | 18 | 13 | 0.019 | 40078666 | 139835623 | tier1 | Out-of-frame | 2864 | NA | 0.36968 |
| BLCA | TCGA-2F-A9KT-01A | TCGA-2F-A9KT | CACNA1I|SYNGR1 | CACNA1I | SYNGR1 | 22 | 22 | 1 | 1 | 6 | 2 | 2 | 0.45 | 40069087 | 39777701 | tier1 | Out-of-frame | 2865 | NA | 0.3486 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | CCDC88C|KIAA0247 | CCDC88C | KIAA0247 | 14 | 14 | -1 | 1 | 4 | 3 | 3 | 0.41 | 91875003 | 70125230 | tier1 | CDS-5UTR | 3185 | NA | 0.33738 |
| BLCA | TCGA-DK-A6B2-01A | TCGA-DK-A6B2 | CCNT1|ADCY6 | CCNT1 | ADCY6 | 12 | 12 | -1 | -1 | 3 | 1 | 1 | 1.6 | 49094796 | 49177221 | tier3 | CDS-5UTR | 3228 | NA | 0.37513 |
| BLCA | TCGA-FD-A3SP-01A | TCGA-FD-A3SP | CCNY|ANK3 | CCNY | ANK3 | 10 | 10 | 1 | -1 | 4 | 4 | 4 | 0.17 | 35626135 | 61874089 | tier1 | Out-of-frame | 3234 | NA | 0.37041 |
| BLCA | TCGA-BL-A0C8-01A | TCGA-BL-A0C8 | CD151|EPS8L2 | CD151 | EPS8L2 | 11 | 11 | 1 | 1 | 35 | 24 | 24 | 0.19 | 836843 | 710422 | tier1 | Out-of-frame | 3261 | validated | 0.36886 |
| BLCA | TCGA-4Z-AA7S-01A | TCGA-4Z-AA7S | CD63|OS9 | CD63 | OS9 | 12 | 12 | -1 | 1 | 482 | 323 | 297 | 1.4 | 56119597 | 58109543 | tier1 | In-frame | 3286 | NA | 0.3589 |
|
Showing page 6 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.