Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-4Z-AA7Q-01A | TCGA-4Z-AA7Q | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 3 | 1 | 1 | 0.83 | 87928576 | 87718027 | tier2 | Out-of-frame | 582 | NA | 0.37171 |
| BLCA | TCGA-4Z-AA87-01A | TCGA-4Z-AA87 | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 43 | 48 | 46 | 0.83 | 87869723 | 87718027 | tier1 | Out-of-frame | 583 | NA | 0.37171 |
| BLCA | TCGA-DK-A1AD-01A | TCGA-DK-A1AD | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 11 | 6 | 5 | 0.83 | 87869723 | 87637683 | tier1 | Out-of-frame | 585 | NA | 0.37171 |
| BLCA | TCGA-E7-A6MD-01A | TCGA-E7-A6MD | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 21 | 14 | 11 | 0.83 | 88046295 | 87720254 | tier1 | In-frame | 586 | NA | 0.37171 |
| BLCA | TCGA-GC-A3BM-01A | TCGA-GC-A3BM | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 15 | 3 | 3 | 0.83 | 88048855 | 87666119 | tier1 | In-frame | 588 | NA | 0.37171 |
| BLCA | TCGA-XF-A9T0-01A | TCGA-XF-A9T0 | AHR|TSPAN13 | AHR | TSPAN13 | 7 | 7 | 1 | 1 | 76 | 50 | 44 | 0.003 | 17338953 | 16815836 | tier1 | Out-of-frame | 701 | NA | 0.36974 |
| BLCA | TCGA-GV-A3QH-01A | TCGA-GV-A3QH | ALCAM|SH3KBP1 | ALCAM | SH3KBP1 | 3 | X | 1 | -1 | 67 | 41 | 37 | 0.019 | 105086325 | 19606920 | tier1 | In-frame | 794 | NA | 0.38493 |
| BLCA | TCGA-BT-A0S7-01A | TCGA-BT-A0S7 | AMOTL1|SLCO2B1 | AMOTL1 | SLCO2B1 | 11 | 11 | 1 | 1 | 6 | 2 | 2 | 0.01 | 94528326 | 74873700 | tier1 | In-frame | 883 | NA | 0.34004 |
| BLCA | TCGA-FD-A6TG-01A | TCGA-FD-A6TG | ANKRD28|GRM7 | ANKRD28 | GRM7 | 3 | 3 | -1 | 1 | 11 | 16 | 16 | 0.002 | 15900884 | 7782044 | tier1 | Out-of-frame | 982 | NA | 0.374 |
| BLCA | TCGA-CF-A8HX-01A | TCGA-CF-A8HX | ANO1|CWF19L2 | ANO1 | CWF19L2 | 11 | 11 | 1 | -1 | 8 | 13 | 12 | 0.56 | 69978185 | 107313775 | tier1 | Out-of-frame | 1020 | NA | 0.34473 |
| BLCA | TCGA-DK-A6B2-01A | TCGA-DK-A6B2 | AP2A2|TSPAN4 | AP2A2 | TSPAN4 | 11 | 11 | 1 | 1 | 17 | 12 | 12 | 0.24 | 946963 | 862550 | tier1 | NA | 1080 | NA | 0.36121 |
| BLCA | TCGA-FD-A3SR-01A | TCGA-FD-A3SR | APLP2|EIF2AK2 | APLP2 | EIF2AK2 | 11 | 2 | 1 | -1 | 2 | 27 | 22 | 0.11 | 130014699 | 37342384 | tier4 | NA | 1127 | NA | 0.38682 |
| BLCA | TCGA-KQ-A41O-01A | TCGA-KQ-A41O | ARAP1|SLC22A8 | ARAP1 | SLC22A8 | 11 | 11 | -1 | -1 | 7 | 9 | 4 | 1.6 | 72404370 | 62782455 | tier1 | CDS-5UTR | 1176 | NA | 0.37968 |
| BLCA | TCGA-FD-A3B8-01A | TCGA-FD-A3B8 | ARHGAP10|TMEM184C | ARHGAP10 | TMEM184C | 4 | 4 | 1 | 1 | 5 | 5 | 5 | 0.49 | 148803083 | 148593018 | tier4 | In-frame | 1209 | NA | 0.37086 |
| BLCA | TCGA-FD-A3B8-01A | TCGA-FD-A3B8 | ARIH2|RHOA | ARIH2 | RHOA | 3 | 3 | 1 | -1 | 11 | 24 | 19 | 0.029 | 48960244 | 49413024 | tier4 | 5UTR-5UTR | 1390 | NA | 0.39044 |
| BLCA | TCGA-XF-AAMX-01A | TCGA-XF-AAMX | ARL13B|EPHA6 | ARL13B | EPHA6 | 3 | 3 | 1 | 1 | 9 | 9 | 9 | 1.9 | 93722752 | 96728848 | tier1 | Out-of-frame | 1394 | NA | 0.36831 |
| BLCA | TCGA-K4-A83P-01A | TCGA-K4-A83P | ARL8B|ITPR1 | ARL8B | ITPR1 | 3 | 3 | 1 | 1 | 15 | 14 | 12 | 0.31 | 5164273 | 4808214 | tier1 | In-frame | 1407 | NA | 0.37826 |
| BLCA | TCGA-XF-A9ST-01A | TCGA-XF-A9ST | ARMC8|CACNA2D2 | ARMC8 | CACNA2D2 | 3 | 3 | 1 | -1 | 5 | 3 | 3 | 0.27 | 138007962 | 50513630 | tier1 | Out-of-frame | 1417 | NA | 0.34704 |
| BLCA | TCGA-S5-A6DX-01A | TCGA-S5-A6DX | ASAP1|ADCY2 | ASAP1 | ADCY2 | 8 | 5 | -1 | 1 | 2 | 2 | 1 | 0.41 | 131226802 | 7784478 | tier3 | Out-of-frame | 1476 | NA | 0.37614 |
| BLCA | TCGA-DK-AA6S-01A | TCGA-DK-AA6S | ASPH|CHMP1A | ASPH | CHMP1A | 8 | 16 | -1 | -1 | 2 | 2 | 1 | 0.47 | 62593527 | 89713739 | tier3 | Out-of-frame | 1537 | NA | 0.34979 |
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