Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCS | TCGA-N9-A4Q7-01A | TCGA-N9-A4Q7 | TYK2|SYMPK | TYK2 | SYMPK | 19 | 19 | -1 | -1 | 7 | 7 | 5 | 0.19 | 10467244 | 46347458 | tier4 | In-frame | 19000 | NA | 0 |
| UCS | TCGA-N5-A59E-01A | TCGA-N5-A59E | USP38|TMEM154 | USP38 | TMEM154 | 4 | 4 | 1 | -1 | 3 | 3 | 2 | 0.22 | 144109114 | 153549713 | tier1 | In-frame | 19378 | NA | 0 |
| UCS | TCGA-NA-A4R1-01A | TCGA-NA-A4R1 | WASF2|FGR | WASF2 | FGR | 1 | 1 | -1 | -1 | 97 | 31 | 27 | 0.55 | 27816497 | 27951662 | tier1 | 5UTR-5UTR | 19733 | NA | 0 |
| UCS | TCGA-N9-A4PZ-01A | TCGA-N9-A4PZ | YWHAE|GCGR | YWHAE | GCGR | 17 | 17 | -1 | 1 | 99 | 47 | 42 | 0.52 | 1303341 | 79766718 | tier1 | CDS-5UTR | 20053 | NA | 0 |
| UCS | TCGA-NF-A5CP-01A | TCGA-NF-A5CP | ZNF423|NCEH1 | ZNF423 | NCEH1 | 16 | 3 | -1 | -1 | 2 | 9 | 9 | 2.8 | 49823398 | 172351882 | tier2 | Out-of-frame | 20494 | NA | 0 |
| UCS | TCGA-N8-A4PL-01A | TCGA-N8-A4PL | ZNF675|SLC27A1 | ZNF675 | SLC27A1 | 19 | 19 | -1 | 1 | 6 | 4 | 4 | 0.08 | 23869833 | 17581349 | tier1 | CDS-5UTR | 20618 | NA | 0 |
| UVM | TCGA-VD-A8KJ-01A | TCGA-VD-A8KJ | C6orf192|TRMT11 | C6orf192 | TRMT11 | 6 | 6 | -1 | 1 | 24 | 17 | 17 | 0.57 | 133118121 | 126342306 | tier1 | Out-of-frame | 2760 | NA | 0 |
| UVM | TCGA-VD-A8KJ-01A | TCGA-VD-A8KJ | FILIP1|KCNQ5 | FILIP1 | KCNQ5 | 6 | 6 | -1 | 1 | 3 | 2 | 2 | 1.1 | 76124413 | 73814980 | tier1 | In-frame | 6541 | NA | 0.36853 |
| UVM | TCGA-VD-A8KJ-01A | TCGA-VD-A8KJ | FYN|CDK19 | FYN | CDK19 | 6 | 6 | -1 | -1 | 6 | 17 | 17 | 0.23 | 112101769 | 110935869 | tier1 | 5UTR-CDS | 6853 | NA | 0.38625 |
| UVM | TCGA-V4-A9EH-01A | TCGA-V4-A9EH | HLA-B|IQCE | HLA-B | IQCE | 6 | 7 | -1 | 1 | 2 | 29 | 13 | 0.031 | 31321649 | 2641075 | tier4 | 3UTR-CDS | 7822 | NA | 0.37516 |
| UVM | TCGA-V4-A9EA-01A | TCGA-V4-A9EA | KLK2|FGFR2 | KLK2 | FGFR2 | 19 | 10 | 1 | -1 | 5 | 7 | 7 | 1.7 | 51376775 | 123310973 | tier1 | In-frame | 9081 | NA | 0.3851 |
| UVM | TCGA-VD-AA8O-01A | TCGA-VD-AA8O | LY6E|PLEKHB2 | LY6E | PLEKHB2 | 8 | 2 | 1 | 1 | 2 | 4 | 2 | 0.22 | 144103826 | 131876464 | tier3 | 3UTR-5UTR | 9694 | NA | 0.36085 |
| UVM | TCGA-VD-A8KJ-01A | TCGA-VD-A8KJ | MAP3K5|OSTM1 | MAP3K5 | OSTM1 | 6 | 6 | -1 | -1 | 10 | 9 | 9 | 0.002 | 137112848 | 108385503 | tier1 | Out-of-frame | 9878 | NA | 0.38539 |
| UVM | TCGA-V4-A9F7-01A | TCGA-V4-A9F7 | OCIAD1|KIT | OCIAD1 | KIT | 4 | 4 | 1 | 1 | 37 | 40 | 29 | 0.35 | 48859382 | 55589750 | tier1 | In-frame | 11998 | NA | 0.38564 |
| UVM | TCGA-V4-A9EK-01A | TCGA-V4-A9EK | PARD3B|SLC40A1 | PARD3B | SLC40A1 | 2 | 2 | 1 | -1 | 3 | 1 | 1 | 1 | 205410842 | 190448146 | tier2 | NA | 12281 | NA | 0.36621 |
| UVM | TCGA-VD-A8KJ-01A | TCGA-VD-A8KJ | SAMD3|GRIK2 | SAMD3 | GRIK2 | 6 | 6 | -1 | 1 | 7 | 6 | 6 | 0.65 | 130634123 | 102483216 | tier1 | 5UTR-CDS | 15288 | NA | 0 |
| UVM | TCGA-VD-A8KJ-01A | TCGA-VD-A8KJ | STX7|LMBRD1 | STX7 | LMBRD1 | 6 | 6 | -1 | -1 | 790 | 783 | 724 | 0.29 | 132824585 | 70386433 | tier1 | In-frame | 17141 | NA | 0 |
| UVM | TCGA-V4-A9EW-01A | TCGA-V4-A9EW | TADA2A|C17orf78 | TADA2A | C17orf78 | 17 | 17 | 1 | 1 | 3 | 11 | 11 | 0.14 | 35767040 | 35734817 | tier4 | 5UTR-CDS | 17305 | NA | 0 |
| UVM | TCGA-VD-A8KJ-01A | TCGA-VD-A8KJ | TMEM200A|FYN | TMEM200A | FYN | 6 | 6 | 1 | -1 | 18 | 31 | 28 | 0.19 | 130687669 | 112101838 | tier1 | 5UTR-5UTR | 18007 | NA | 0 |
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