Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 326 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCS | TCGA-N5-A4RS-01A | TCGA-N5-A4RS | RNF2|MRC2 | RNF2 | MRC2 | 1 | 17 | 1 | 1 | 4 | 7 | 7 | 0.77 | 185056772 | 60741909 | tier1 | Out-of-frame | 14808 | NA | 0 |
| UCS | TCGA-N8-A4PM-01A | TCGA-N8-A4PM | ROR2|FAM50B | ROR2 | FAM50B | 9 | 6 | -1 | 1 | 2 | 1 | 1 | 0.28 | 94712149 | 3850023 | tier2 | CDS-5UTR | 14902 | NA | 0 |
| UCS | TCGA-N6-A4VG-01A | TCGA-N6-A4VG | RRAGC|RHBDL2 | RRAGC | RHBDL2 | 1 | 1 | -1 | -1 | 3 | 1 | 1 | 2.5 | 39317287 | 39377106 | tier3 | In-frame | 15114 | NA | 0 |
| UCS | TCGA-N9-A4PZ-01A | TCGA-N9-A4PZ | SBNO2|C19orf26 | SBNO2 | C19orf26 | 19 | 19 | -1 | -1 | 17 | 7 | 6 | 0.003 | 1174171 | 1234741 | tier1 | 5UTR-CDS | 15347 | NA | 0 |
| UCS | TCGA-N8-A4PN-01A | TCGA-N8-A4PN | SERINC3|NCOA5 | SERINC3 | NCOA5 | 20 | 20 | -1 | -1 | 138 | 88 | 82 | 1.8 | 43139930 | 44691528 | tier1 | In-frame | 15638 | NA | 0 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | SLC1A6|AKAP8L | SLC1A6 | AKAP8L | 19 | 19 | -1 | -1 | 15 | 5 | 5 | 0.13 | 15075131 | 15491423 | tier1 | In-frame | 16053 | NA | 0 |
| UCS | TCGA-NF-A4WX-01A | TCGA-NF-A4WX | SLC27A1|KIAA0391 | SLC27A1 | KIAA0391 | 19 | 14 | 1 | 1 | 27 | 9 | 9 | 1.2 | 17599926 | 35735933 | tier1 | In-frame | 16122 | NA | 0 |
| UCS | TCGA-N8-A4PI-01A | TCGA-N8-A4PI | SLC3A2|ASRGL1 | SLC3A2 | ASRGL1 | 11 | 11 | 1 | 1 | 12 | 8 | 8 | 0.19 | 62623853 | 62156605 | tier1 | Out-of-frame | 16216 | NA | 0 |
| UCS | TCGA-NA-A5I1-01A | TCGA-NA-A5I1 | SLC7A6|C16orf70 | SLC7A6 | C16orf70 | 16 | 16 | 1 | 1 | 3 | 7 | 7 | 0.63 | 68300624 | 67165189 | tier1 | 5UTR-CDS | 16291 | NA | 0 |
| UCS | TCGA-N5-A4RT-01A | TCGA-N5-A4RT | SMARCA4|DNM2 | SMARCA4 | DNM2 | 19 | 19 | 1 | 1 | 6 | 9 | 4 | 0.096 | 11170863 | 10939712 | tier1 | In-frame | 16374 | NA | 0 |
| UCS | TCGA-N5-A59F-01A | TCGA-N5-A59F | STRA6|NDUFAF1 | STRA6 | NDUFAF1 | 15 | 15 | -1 | -1 | 11 | 8 | 8 | 0.53 | 74476197 | 41679791 | tier1 | Out-of-frame | 17098 | NA | 0 |
| UCS | TCGA-N8-A4PQ-01A | TCGA-N8-A4PQ | SUZ12|ADAP2 | SUZ12 | ADAP2 | 17 | 17 | 1 | 1 | 3 | 3 | 3 | 1.6 | 30267505 | 29271925 | tier4 | Out-of-frame | 17214 | NA | 0 |
| UCS | TCGA-N5-A4RT-01A | TCGA-N5-A4RT | TBC1D23|TMEM30C | TBC1D23 | TMEM30C | 3 | 3 | 1 | 1 | 7 | 3 | 3 | 0.7 | 100009545 | 99908785 | tier1 | In-frame | 17487 | NA | 0 |
| UCS | TCGA-N6-A4V9-01A | TCGA-N6-A4V9 | TBC1D8B|RNF128 | TBC1D8B | RNF128 | X | X | 1 | 1 | 2 | 1 | 1 | 0.57 | 106046213 | 106028295 | tier2 | Out-of-frame | 17507 | NA | 0 |
| UCS | TCGA-N8-A4PM-01A | TCGA-N8-A4PM | TM9SF4|DEFB123 | TM9SF4 | DEFB123 | 20 | 20 | 1 | 1 | 367 | 154 | 138 | 0.79 | 30742989 | 30037832 | tier1 | Out-of-frame | 17876 | NA | 0 |
| UCS | TCGA-NF-A4WX-01A | TCGA-NF-A4WX | TMEM131|PLA2G6 | TMEM131 | PLA2G6 | 2 | 22 | -1 | -1 | 25 | 14 | 14 | 2.7 | 98408849 | 38531091 | tier1 | Out-of-frame | 17957 | NA | 0 |
| UCS | TCGA-N5-A4RN-01A | TCGA-N5-A4RN | TMOD3|SPG11 | TMOD3 | SPG11 | 15 | 15 | 1 | -1 | 5 | 3 | 3 | 0.37 | 52122033 | 44878048 | tier1 | 5UTR-CDS | 18079 | NA | 0 |
| UCS | TCGA-N6-A4VC-01A | TCGA-N6-A4VC | TPT1|ERBB3 | TPT1 | ERBB3 | 13 | 12 | -1 | 1 | 2 | 59 | 29 | 2.8 | 45911313 | 56492035 | tier3 | 3UTR-5UTR | 18505 | NA | 0 |
| UCS | TCGA-N5-A4RV-01A | TCGA-N5-A4RV | TTC7B|HTRA3 | TTC7B | HTRA3 | 14 | 4 | -1 | 1 | 8 | 7 | 7 | 1.1 | 91211136 | 8284164 | tier1 | Out-of-frame | 18888 | NA | 0 |
| UCS | TCGA-N5-A4R8-01A | TCGA-N5-A4R8 | TUSC3|HOOK3 | TUSC3 | HOOK3 | 8 | 8 | 1 | 1 | 11 | 8 | 8 | 0.4 | 15398077 | 42819454 | tier1 | In-frame | 18968 | NA | 0 |
|
Showing page 326 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.