Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-AJ-A3NH-01A | TCGA-AJ-A3NH | ZNF646|VSTM1 | ZNF646 | VSTM1 | 16 | 19 | 1 | -1 | 27 | 12 | 11 | 0.27 | 31085952 | 54545623 | tier1 | 5UTR-CDS | 20608 | NA | 0 |
| UCEC | TCGA-A5-A1OH-01A | TCGA-A5-A1OH | ZNF790|ATP4A | ZNF790 | ATP4A | 19 | 19 | -1 | -1 | 77 | 62 | 56 | 3.3 | 37340904 | 36044084 | tier1 | NA | 20664 | NA | 0 |
| UCS | TCGA-N5-A59F-01A | TCGA-N5-A59F | AAK1|LHX2 | AAK1 | LHX2 | 2 | 9 | -1 | 1 | 5 | 2 | 2 | 0.11 | 69783992 | 126776240 | tier1 | In-frame | 11 | NA | 0.3711 |
| UCS | TCGA-N6-A4VF-01A | TCGA-N6-A4VF | AARSD1|CHRNB1 | AARSD1 | CHRNB1 | 17 | 17 | -1 | 1 | 8 | 4 | 3 | 0.2 | 41116123 | 7357616 | tier1 | Out-of-frame | 20 | NA | 0.34339 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | ABCC4|UGGT2 | ABCC4 | UGGT2 | 13 | 13 | -1 | -1 | 15 | 2 | 2 | 3.5 | 95953495 | 96489456 | tier1 | Out-of-frame | 68 | NA | 0.35055 |
| UCS | TCGA-NF-A5CP-01A | TCGA-NF-A5CP | ANK3|MCU | ANK3 | MCU | 10 | 10 | -1 | 1 | 5 | 2 | 2 | 0.04 | 62374944 | 74594117 | tier1 | In-frame | 907 | NA | 0.36802 |
| UCS | TCGA-NA-A4R1-01A | TCGA-NA-A4R1 | ARHGAP10|TMEM184C | ARHGAP10 | TMEM184C | 4 | 4 | 1 | 1 | 5 | 2 | 2 | 0.49 | 148653606 | 148544985 | tier1 | Out-of-frame | 1210 | NA | 0.37086 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | ARRB1|GDPD5 | ARRB1 | GDPD5 | 11 | 11 | -1 | -1 | 23 | 11 | 11 | 0.14 | 74998359 | 75173934 | tier2 | Out-of-frame | 1452 | NA | 0.37652 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | ATP6V0A4|TM4SF20 | ATP6V0A4 | TM4SF20 | 7 | 2 | -1 | -1 | 3 | 5 | 5 | 0.073 | 138406642 | 228235696 | tier1 | In-frame | 1750 | NA | 0.35165 |
| UCS | TCGA-N9-A4PZ-01A | TCGA-N9-A4PZ | B4GALT1|BAG1 | B4GALT1 | BAG1 | 9 | 9 | -1 | -1 | 14 | 6 | 5 | 0.17 | 33166756 | 33262828 | tier1 | In-frame | 1869 | NA | 0.37586 |
| UCS | TCGA-NA-A4R1-01A | TCGA-NA-A4R1 | BMPR2|NOP58 | BMPR2 | NOP58 | 2 | 2 | 1 | 1 | 59 | 37 | 32 | 0.83 | 203242273 | 203139836 | tier1 | Out-of-frame | 2143 | NA | 0.37696 |
| UCS | TCGA-N5-A4RT-01A | TCGA-N5-A4RT | C1orf9|PRRC2C | C1orf9 | PRRC2C | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.015 | 172554226 | 171540459 | tier2 | Out-of-frame | 2618 | NA | 0 |
| UCS | TCGA-N5-A4RN-01A | TCGA-N5-A4RN | C3orf78|STAB1 | C3orf78 | STAB1 | 3 | 3 | 1 | 1 | 3 | 3 | 3 | 1.7 | 52570922 | 52535182 | tier1 | Out-of-frame | 2721 | NA | 0 |
| UCS | TCGA-NG-A4VU-01A | TCGA-NG-A4VU | CD44|CAPRIN1 | CD44 | CAPRIN1 | 11 | 11 | 1 | 1 | 173 | 103 | 82 | 2.3 | 35160917 | 34110942 | tier2 | In-frame | 3272 | NA | 0.37609 |
| UCS | TCGA-N9-A4Q7-01A | TCGA-N9-A4Q7 | CD74|NDUFV1 | CD74 | NDUFV1 | 5 | 11 | -1 | 1 | 2 | 55 | 13 | 1.2 | 149781200 | 67375697 | tier3 | NA | 3293 | NA | 0.36562 |
| UCS | TCGA-NA-A5I1-01A | TCGA-NA-A5I1 | CD81|ARMC3 | CD81 | ARMC3 | 11 | 10 | 1 | 1 | 57 | 65 | 54 | 0.52 | 2398845 | 23321790 | tier1 | Out-of-frame | 3301 | NA | 0.36624 |
| UCS | TCGA-ND-A4WC-01A | TCGA-ND-A4WC | CELSR1|TRMU | CELSR1 | TRMU | 22 | 22 | -1 | 1 | 2 | 2 | 2 | 0.064 | 46780440 | 46751341 | tier3 | Out-of-frame | 3513 | NA | 0.36293 |
| UCS | TCGA-NA-A4QV-01A | TCGA-NA-A4QV | CELSR2|KIAA1324 | CELSR2 | KIAA1324 | 1 | 1 | 1 | 1 | 22 | 22 | 19 | 0.37 | 109796011 | 109707121 | tier2 | In-frame | 3517 | NA | 0.35717 |
| UCS | TCGA-N5-A59E-01A | TCGA-N5-A59E | CFLAR|NDUFB3 | CFLAR | NDUFB3 | 2 | 2 | 1 | 1 | 30 | 37 | 28 | 100 | 201981204 | 201950182 | tier1 | 5UTR-CDS | 3592 | NA | 0.37435 |
| UCS | TCGA-QN-A5NN-01A | TCGA-QN-A5NN | CFLAR|NDUFB3 | CFLAR | NDUFB3 | 2 | 2 | 1 | 1 | 2 | 10 | 7 | 100 | 202014558 | 201950182 | tier3 | Out-of-frame | 3594 | NA | 0.37435 |
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