Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
UCEC | TCGA-D1-A3DH-01A | TCGA-D1-A3DH | PTPRK|FBXO5 | PTPRK | FBXO5 | 6 | 6 | -1 | -1 | 8 | 4 | 3 | 1.7 | 128718711 | 153296756 | tier1 | In-frame | 13879 | NA | 0 |
UCEC | TCGA-BK-A139-02A | TCGA-BK-A139 | PTPRN2|LRRC37B | PTPRN2 | LRRC37B | 7 | 17 | -1 | 1 | 2 | 1 | 1 | 0.042 | 157903521 | 30357675 | tier2 | In-frame | 13905 | NA | 0 |
UCEC | TCGA-2E-A9G8-01A | TCGA-2E-A9G8 | PTPRU|KAZN | PTPRU | KAZN | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.34 | 29602268 | 14925479 | tier2 | CDS-5UTR | 13923 | NA | 0 |
UCEC | TCGA-FI-A3PX-01A | TCGA-FI-A3PX | PUM1|NKAIN1 | PUM1 | NKAIN1 | 1 | 1 | -1 | -1 | 42 | 38 | 35 | 0.5 | 31422980 | 31661034 | tier1 | In-frame | 13946 | NA | 0 |
UCEC | TCGA-B5-A5OE-01A | TCGA-B5-A5OE | PVR|ZNF233 | PVR | ZNF233 | 19 | 19 | 1 | 1 | 22 | 20 | 19 | 2 | 45150842 | 44768467 | tier1 | In-frame | 13971 | NA | 0 |
UCEC | TCGA-EY-A4KR-01A | TCGA-EY-A4KR | PVRL2|CEACAM19 | PVRL2 | CEACAM19 | 19 | 19 | 1 | 1 | 19 | 18 | 17 | 0.8 | 45349870 | 45175868 | tier1 | In-frame | 13973 | NA | 0 |
UCEC | TCGA-SL-A6J9-01A | TCGA-SL-A6J9 | RAD50|SLC22A4 | RAD50 | SLC22A4 | 5 | 5 | 1 | 1 | 11 | 4 | 4 | 0.52 | 131973915 | 131670411 | tier1 | Out-of-frame | 14161 | NA | 0 |
UCEC | TCGA-AJ-A3EM-01A | TCGA-AJ-A3EM | RASGRP1|CD47 | RASGRP1 | CD47 | 15 | 3 | -1 | -1 | 25 | 12 | 10 | 0.074 | 38852022 | 107799191 | tier1 | In-frame | 14376 | NA | 0 |
UCEC | TCGA-AJ-A3BD-01A | TCGA-AJ-A3BD | RCN3|FLT3LG | RCN3 | FLT3LG | 19 | 19 | 1 | 1 | 4 | 3 | 3 | 0.067 | 50042436 | 49989272 | tier1 | CDS-3UTR | 14513 | NA | 0 |
UCEC | TCGA-AJ-A3BF-01A | TCGA-AJ-A3BF | RERE|SLC2A5 | RERE | SLC2A5 | 1 | 1 | -1 | -1 | 45 | 40 | 38 | 0.34 | 8555123 | 9118309 | tier1 | In-frame | 14559 | NA | 0 |
UCEC | TCGA-PG-A5BC-01A | TCGA-PG-A5BC | RERE|SLC2A7 | RERE | SLC2A7 | 1 | 1 | -1 | -1 | 10 | 6 | 6 | 1.5 | 8716032 | 9079392 | tier1 | Out-of-frame | 14561 | NA | 0 |
UCEC | TCGA-B5-A3S1-01A | TCGA-B5-A3S1 | REV3L|FYN | REV3L | FYN | 6 | 6 | -1 | -1 | 7 | 9 | 7 | 0.4 | 111732683 | 112101838 | tier1 | CDS-5UTR | 14575 | NA | 0 |
UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | REV3L|FYN | REV3L | FYN | 6 | 6 | -1 | -1 | 21 | 13 | 11 | 0.4 | 111803953 | 112041265 | tier2 | CDS-5UTR | 14578 | NA | 0 |
UCEC | TCGA-B5-A3S1-01A | TCGA-B5-A3S1 | RNF214|SIDT2 | RNF214 | SIDT2 | 11 | 11 | 1 | 1 | 3 | 2 | 1 | 0.45 | 117117664 | 117054790 | tier2 | Out-of-frame | 14821 | NA | 0 |
UCEC | TCGA-A5-A3LP-01A | TCGA-A5-A3LP | RNH1|TOLLIP | RNH1 | TOLLIP | 11 | 11 | -1 | -1 | 5 | 4 | 3 | 1.4 | 507113 | 1317024 | tier1 | 5UTR-CDS | 14862 | NA | 0 |
UCEC | TCGA-B5-A3S1-01A | TCGA-B5-A3S1 | RP11-73M18.2|MARK3 | RP11-73M18.2 | MARK3 | 14 | 14 | 1 | 1 | 2 | 1 | 1 | 0.027 | 104124113 | 103969219 | tier2 | Out-of-frame | 14945 | NA | 0 |
UCEC | TCGA-A5-A3LP-01A | TCGA-A5-A3LP | RPTOR|CD163 | RPTOR | CD163 | 17 | 12 | 1 | -1 | 12 | 21 | 2 | 1 | 78599593 | 7655160 | tier1 | In-frame | 15104 | NA | 0 |
UCEC | TCGA-KP-A3VZ-01A | TCGA-KP-A3VZ | RYR1|ZNF383 | RYR1 | ZNF383 | 19 | 19 | 1 | 1 | 54 | 32 | 26 | 0.92 | 39068844 | 37733371 | tier1 | Out-of-frame | 15217 | NA | 0 |
UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | SBNO2|CACNA2D2 | SBNO2 | CACNA2D2 | 19 | 3 | -1 | -1 | 12 | 1 | 1 | 0.002 | 1132089 | 50471860 | tier2 | In-frame | 15348 | NA | 0 |
UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | SEPT9|MGAT5B | SEPT9 | MGAT5B | 17 | 17 | 1 | 1 | 70 | 66 | 63 | 0.67 | 75369634 | 74934070 | tier1 | Out-of-frame | 15612 | NA | 0 |
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