Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-A5-A3LP-01A | TCGA-A5-A3LP | MUC1|FAM189B | MUC1 | FAM189B | 1 | 1 | -1 | -1 | 9 | 2 | 2 | 0.21 | 155161974 | 155220955 | tier1 | In-frame | 10851 | NA | 0.36789 |
| UCEC | TCGA-BK-A139-02A | TCGA-BK-A139 | MUC1|GBA | MUC1 | GBA | 1 | 1 | -1 | -1 | 115 | 75 | 70 | 2 | 155162577 | 155210508 | tier1 | Out-of-frame | 10852 | NA | 0.37152 |
| UCEC | TCGA-D1-A3DG-01A | TCGA-D1-A3DG | MYH9|HSP90AA1 | MYH9 | HSP90AA1 | 22 | 14 | -1 | -1 | 28 | 45 | 36 | 0.077 | 36783852 | 102550901 | tier1 | 5UTR-CDS | 10907 | NA | 0.38463 |
| UCEC | TCGA-EY-A2ON-01A | TCGA-EY-A2ON | MYH9|TXN2 | MYH9 | TXN2 | 22 | 22 | -1 | -1 | 2 | 5 | 4 | 0.003 | 36705327 | 36863964 | tier4 | Out-of-frame | 10920 | NA | 0.37799 |
| UCEC | TCGA-AJ-A3BD-01A | TCGA-AJ-A3BD | MYO1C|SMTNL2 | MYO1C | SMTNL2 | 17 | 17 | -1 | 1 | 14 | 12 | 8 | 0.4 | 1381704 | 4510656 | tier1 | In-frame | 10967 | NA | 0.36934 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | MYO1E|TMCO3 | MYO1E | TMCO3 | 15 | 13 | -1 | 1 | 17 | 10 | 10 | 6.2 | 59664697 | 114174931 | tier1 | Out-of-frame | 10984 | NA | 0.35542 |
| UCEC | TCGA-AP-A5FX-01A | TCGA-AP-A5FX | MYO6|DEPTOR | MYO6 | DEPTOR | 6 | 8 | 1 | 1 | 8 | 12 | 10 | 0.065 | 76527381 | 120977472 | tier1 | Out-of-frame | 10998 | NA | 0.36687 |
| UCEC | TCGA-AJ-A3EM-01A | TCGA-AJ-A3EM | MYO6|SENP6 | MYO6 | SENP6 | 6 | 6 | 1 | 1 | 12 | 12 | 10 | 0.004 | 76459140 | 76405520 | tier1 | 5UTR-CDS | 11002 | NA | 0.3713 |
| UCEC | TCGA-B5-A0JN-01A | TCGA-B5-A0JN | MYO6|SENP6 | MYO6 | SENP6 | 6 | 6 | 1 | 1 | 5 | 4 | 4 | 0.004 | 76459140 | 76423229 | tier1 | 5UTR-CDS | 11003 | non-validated | 0.3713 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 34 | 40 | 36 | 0.08 | 125051854 | 125279814 | tier1 | NA | 11258 | NA | 0.37966 |
| UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | NF1|ADAP2 | NF1 | ADAP2 | 17 | 17 | 1 | 1 | 2 | 3 | 3 | 4.5 | 29422387 | 29271925 | tier3 | In-frame | 11395 | NA | 0.37399 |
| UCEC | TCGA-BK-A26L-01A | TCGA-BK-A26L | NLGN4X|DMD | NLGN4X | DMD | X | X | -1 | -1 | 10 | 17 | 17 | 0.85 | 5947321 | 31792309 | tier1 | In-frame | 11595 | non-validated | 0.36944 |
| UCEC | TCGA-KP-A3W1-01A | TCGA-KP-A3W1 | NMI|SLC9A4 | NMI | SLC9A4 | 2 | 2 | -1 | 1 | 3 | 3 | 2 | 0.24 | 152138462 | 103125306 | tier1 | In-frame | 11618 | NA | 0.35189 |
| UCEC | TCGA-B5-A3S1-01A | TCGA-B5-A3S1 | NOTCH1|LCN10 | NOTCH1 | LCN10 | 9 | 9 | -1 | -1 | 3 | 2 | 2 | 2.9 | 139438476 | 139634500 | tier1 | Out-of-frame | 11661 | NA | 0.38554 |
| UCEC | TCGA-B5-A0JN-01A | TCGA-B5-A0JN | NOTCH3|BRD4 | NOTCH3 | BRD4 | 19 | 19 | -1 | -1 | 3 | 3 | 3 | 0.01 | 15299800 | 15360101 | tier1 | In-frame | 11670 | non-validated | 0.37741 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | NR2F6|PLVAP | NR2F6 | PLVAP | 19 | 19 | -1 | -1 | 9 | 11 | 11 | 0.51 | 17351480 | 17477004 | tier1 | Out-of-frame | 11721 | NA | 0.37072 |
| UCEC | TCGA-DF-A2KN-01A | TCGA-DF-A2KN | NUDT21|BBS2 | NUDT21 | BBS2 | 16 | 16 | -1 | -1 | 3 | 2 | 2 | 0.13 | 56484999 | 56519650 | tier1 | In-frame | 11865 | NA | 0.36688 |
| UCEC | TCGA-D1-A3JP-01A | TCGA-D1-A3JP | NVL|SUSD4 | NVL | SUSD4 | 1 | 1 | -1 | -1 | 21 | 17 | 16 | 4.7 | 224517773 | 223442017 | tier1 | Out-of-frame | 11965 | NA | 0.35879 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | NXN|SLC43A2 | NXN | SLC43A2 | 17 | 17 | -1 | -1 | 41 | 19 | 17 | 0.094 | 882559 | 1518328 | tier1 | Out-of-frame | 11974 | NA | 0.34083 |
| UCEC | TCGA-AP-A5FX-01A | TCGA-AP-A5FX | PACSIN2|MCAT | PACSIN2 | MCAT | 22 | 22 | -1 | -1 | 6 | 1 | 1 | 0.55 | 43411027 | 43537255 | tier2 | 5UTR-CDS | 12175 | NA | 0.36102 |
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