Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-AJ-A3NH-01A | TCGA-AJ-A3NH | LDLR|DNM2 | LDLR | DNM2 | 19 | 19 | 1 | 1 | 10 | 6 | 5 | 0.087 | 11200291 | 10935733 | tier1 | Out-of-frame | 9267 | NA | 0.38409 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | LGR6|GPR37L1 | LGR6 | GPR37L1 | 1 | 1 | 1 | 1 | 5 | 10 | 7 | 1.1 | 202163329 | 202096869 | tier1 | Out-of-frame | 9317 | NA | 0.34842 |
| UCEC | TCGA-AJ-A3BF-01A | TCGA-AJ-A3BF | LGR6|NAV1 | LGR6 | NAV1 | 1 | 1 | 1 | 1 | 2 | 3 | 3 | 0.48 | 202205121 | 201749549 | tier2 | In-frame | 9320 | NA | 0.35722 |
| UCEC | TCGA-AJ-A3NF-01A | TCGA-AJ-A3NF | LIMA1|ANO6 | LIMA1 | ANO6 | 12 | 12 | -1 | 1 | 4 | 1 | 1 | 0.069 | 50642416 | 45695797 | tier2 | Out-of-frame | 9334 | NA | 0.35269 |
| UCEC | TCGA-B5-A1MS-01B | TCGA-B5-A1MS | LRBA|DLG2 | LRBA | DLG2 | 4 | 11 | -1 | -1 | 14 | 6 | 6 | 0.83 | 151271144 | 83770527 | tier1 | Out-of-frame | 9474 | NA | 0.37989 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | LRRC68|ALOX15B | LRRC68 | ALOX15B | 19 | 17 | 1 | 1 | 14 | 9 | 8 | 0.007 | 45596785 | 7945687 | tier1 | Out-of-frame | 9581 | NA | 0.35591 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | LRRC8A|MEN1 | LRRC8A | MEN1 | 9 | 11 | 1 | -1 | 3 | 5 | 5 | 0.15 | 131644529 | 64578377 | tier1 | 5UTR-5UTR | 9602 | NA | 0.36214 |
| UCEC | TCGA-EY-A4KR-01A | TCGA-EY-A4KR | MACF1|HDAC5 | MACF1 | HDAC5 | 1 | 17 | 1 | -1 | 2 | 3 | 2 | 0.11 | 39723700 | 42195072 | tier2 | CDS-5UTR | 9730 | NA | 0.38177 |
| UCEC | TCGA-FI-A3PV-01A | TCGA-FI-A3PV | MAN1A2|PTGFRN | MAN1A2 | PTGFRN | 1 | 1 | 1 | 1 | 9 | 5 | 5 | 0.013 | 117984947 | 117529423 | tier1 | Out-of-frame | 9806 | NA | 0.3569 |
| UCEC | TCGA-B5-A0JN-01A | TCGA-B5-A0JN | MAP4|PLXNB1 | MAP4 | PLXNB1 | 3 | 3 | -1 | -1 | 3 | 3 | 2 | 0.67 | 48019355 | 48457168 | tier1 | Out-of-frame | 9892 | non-validated | 0.37852 |
| UCEC | TCGA-AJ-A3BD-01A | TCGA-AJ-A3BD | MAP4|SPINK8 | MAP4 | SPINK8 | 3 | 3 | -1 | -1 | 30 | 16 | 12 | 1.7 | 47956307 | 48351436 | tier1 | Out-of-frame | 9900 | NA | 0.36249 |
| UCEC | TCGA-EO-A1Y7-01A | TCGA-EO-A1Y7 | MAP4|SPINK8 | MAP4 | SPINK8 | 3 | 3 | -1 | -1 | 2 | 1 | 1 | 1.7 | 48019355 | 48351436 | tier2 | Out-of-frame | 9901 | NA | 0.36249 |
| UCEC | TCGA-EO-A1Y7-01A | TCGA-EO-A1Y7 | MAPKAPK2|PLA2G2A | MAPKAPK2 | PLA2G2A | 1 | 1 | 1 | -1 | 101 | 119 | 100 | 0.1 | 206858853 | 20305372 | tier1 | CDS-5UTR | 9962 | NA | 0.38212 |
| UCEC | TCGA-B5-A3FB-01A | TCGA-B5-A3FB | MARK2|C11orf84 | MARK2 | C11orf84 | 11 | 11 | 1 | 1 | 7 | 2 | 2 | 0.097 | 63607032 | 63585277 | tier1 | Out-of-frame | 9998 | NA | 0 |
| UCEC | TCGA-AP-A5FX-01A | TCGA-AP-A5FX | MARVELD2|PIK3R1 | MARVELD2 | PIK3R1 | 5 | 5 | 1 | 1 | 6 | 13 | 11 | 0.09 | 68720463 | 67589537 | tier1 | In-frame | 10013 | NA | 0.3835 |
| UCEC | TCGA-AX-A3FX-01A | TCGA-AX-A3FX | MBTPS1|CDH5 | MBTPS1 | CDH5 | 16 | 16 | -1 | 1 | 5 | 3 | 3 | 0.18 | 84096910 | 66422227 | tier1 | In-frame | 10070 | NA | 0.37758 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | MECOM|SLC7A14 | MECOM | SLC7A14 | 3 | 3 | -1 | -1 | 37 | 39 | 35 | 1 | 169381124 | 170219134 | tier1 | In-frame | 10144 | NA | 0.33094 |
| UCEC | TCGA-B5-A0JN-01A | TCGA-B5-A0JN | MET|CAV1 | MET | CAV1 | 7 | 7 | 1 | 1 | 22 | 31 | 27 | 0.18 | 116381079 | 116199000 | tier1 | In-frame | 10255 | validated | 0.38279 |
| UCEC | TCGA-FI-A3PV-01A | TCGA-FI-A3PV | MIB2|ACVR1B | MIB2 | ACVR1B | 1 | 12 | 1 | 1 | 7 | 6 | 6 | 0.54 | 1559325 | 52369049 | tier1 | CDS-5UTR | 10336 | NA | 0.38449 |
| UCEC | TCGA-KP-A3W4-01A | TCGA-KP-A3W4 | MKNK1|KIAA0494 | MKNK1 | KIAA0494 | 1 | 1 | -1 | -1 | 9 | 4 | 4 | 1.9 | 47082383 | 47182115 | tier4 | 5UTR-CDS | 10427 | NA | 0.37768 |
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