Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | FGFR2|KIAA1598 | FGFR2 | KIAA1598 | 10 | 10 | -1 | -1 | 766 | 502 | 467 | 0.19 | 123243212 | 118708508 | tier1 | In-frame | 6467 | NA | 0.38149 |
| UCEC | TCGA-DI-A2QY-01A | TCGA-DI-A2QY | FRAS1|MGMT | FRAS1 | MGMT | 4 | 10 | 1 | 1 | 7 | 5 | 5 | 0.78 | 79343154 | 131334505 | tier1 | Out-of-frame | 6707 | NA | 0.36486 |
| UCEC | TCGA-AJ-A3QS-01A | TCGA-AJ-A3QS | GABPA|JAM2 | GABPA | JAM2 | 21 | 21 | 1 | 1 | 17 | 32 | 27 | 0.23 | 27113986 | 27078291 | tier1 | Out-of-frame | 6893 | NA | 0.37257 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | GPR173|TGM7 | GPR173 | TGM7 | X | 15 | 1 | -1 | 3 | 2 | 1 | 0.11 | 53078666 | 43572149 | tier2 | 5UTR-CDS | 7372 | NA | 0.35 |
| UCEC | TCGA-AX-A3G6-01A | TCGA-AX-A3G6 | GRN|ERBB3 | GRN | ERBB3 | 17 | 12 | 1 | 1 | 2 | 11 | 7 | 0.04 | 42430470 | 56492035 | tier3 | 3UTR-5UTR | 7471 | NA | 0.3845 |
| UCEC | TCGA-EO-A22U-01A | TCGA-EO-A22U | HIF1A|PRKCH | HIF1A | PRKCH | 14 | 14 | 1 | 1 | 2 | 2 | 2 | 0.5 | 62162557 | 61995793 | tier4 | In-frame | 7758 | NA | 0.39003 |
| UCEC | TCGA-AX-A3G3-01A | TCGA-AX-A3G3 | HLA-B|CBS | HLA-B | CBS | 6 | 21 | -1 | -1 | 2 | 87 | 57 | 0.5 | 31321649 | 44476011 | tier3 | NA | 7815 | NA | 0.37362 |
| UCEC | TCGA-B5-A5OD-01A | TCGA-B5-A5OD | HOXB3|FAP | HOXB3 | FAP | 17 | 2 | -1 | -1 | 4 | 6 | 6 | 0.42 | 46651199 | 163044873 | tier1 | 5UTR-CDS | 7937 | NA | 0.36085 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | HTR7|C10orf11 | HTR7 | C10orf11 | 10 | 10 | -1 | 1 | 3 | 4 | 4 | 1.3 | 92616890 | 77795766 | tier1 | In-frame | 8029 | NA | 0 |
| UCEC | TCGA-AJ-A3QS-01A | TCGA-AJ-A3QS | IPP|SLC22A7 | IPP | SLC22A7 | 1 | 6 | -1 | 1 | 5 | 1 | 1 | 0.99 | 46165742 | 43266358 | tier2 | NA | 8305 | NA | 0.35685 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | IQGAP1|SEMA4B | IQGAP1 | SEMA4B | 15 | 15 | 1 | 1 | 8 | 4 | 2 | 0.98 | 90934105 | 90744690 | tier1 | CDS-5UTR | 8316 | NA | 0.38447 |
| UCEC | TCGA-EY-A4KR-01A | TCGA-EY-A4KR | IQGAP1|ZNF710 | IQGAP1 | ZNF710 | 15 | 15 | 1 | 1 | 11 | 2 | 1 | 1.2 | 90934105 | 90610342 | tier2 | CDS-5UTR | 8322 | NA | 0.38712 |
| UCEC | TCGA-EO-A3AS-01A | TCGA-EO-A3AS | ITGB5|HDAC9 | ITGB5 | HDAC9 | 3 | 7 | -1 | 1 | 4 | 7 | 5 | 0.73 | 124487860 | 18535885 | tier1 | CDS-5UTR | 8405 | NA | 0.37606 |
| UCEC | TCGA-B5-A1MW-01A | TCGA-B5-A1MW | KIAA0247|PLEKHD1 | KIAA0247 | PLEKHD1 | 14 | 14 | 1 | 1 | 9 | 3 | 3 | 0.35 | 70078545 | 69966832 | tier1 | 5UTR-CDS | 8764 | NA | 0.33371 |
| UCEC | TCGA-EY-A4KR-01A | TCGA-EY-A4KR | KIAA0247|PLEKHD1 | KIAA0247 | PLEKHD1 | 14 | 14 | 1 | 1 | 2 | 2 | 2 | 0.35 | 70125430 | 69966832 | tier2 | Out-of-frame | 8765 | NA | 0.33371 |
| UCEC | TCGA-B5-A1MW-01A | TCGA-B5-A1MW | KIAA0247|SLC39A9 | KIAA0247 | SLC39A9 | 14 | 14 | 1 | 1 | 4 | 1 | 1 | 0.056 | 70078545 | 69928414 | tier2 | 5UTR-CDS | 8767 | NA | 0.34143 |
| UCEC | TCGA-A5-A3LP-01A | TCGA-A5-A3LP | KIAA0319L|EIF4G3 | KIAA0319L | EIF4G3 | 1 | 1 | -1 | -1 | 6 | 4 | 4 | 0.3 | 36019951 | 21415706 | tier1 | Out-of-frame | 8774 | NA | 0.3608 |
| UCEC | TCGA-FI-A3PX-01A | TCGA-FI-A3PX | KIAA0922|MND1 | KIAA0922 | MND1 | 4 | 4 | 1 | 1 | 2 | 1 | 1 | 0.6 | 154395040 | 154271216 | tier2 | Out-of-frame | 8812 | NA | 0.34132 |
| UCEC | TCGA-AX-A3G4-01A | TCGA-AX-A3G4 | KIAA1797|CD2 | KIAA1797 | CD2 | 9 | 1 | 1 | 1 | 26 | 14 | 12 | 1.2 | 20823114 | 117303024 | tier1 | Out-of-frame | 8905 | NA | 0.36661 |
| UCEC | TCGA-B5-A0JN-01A | TCGA-B5-A0JN | KLC1|MARK3 | KLC1 | MARK3 | 14 | 14 | 1 | 1 | 16 | 24 | 23 | 0.033 | 104095831 | 103969219 | tier1 | 5UTR-CDS | 9035 | non-validated | 0.38277 |
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