Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-AJ-A3EJ-01A | TCGA-AJ-A3EJ | CSNK1D|SECTM1 | CSNK1D | SECTM1 | 17 | 17 | -1 | -1 | 9 | 6 | 5 | 0.57 | 80231182 | 80280887 | tier1 | In-frame | 4283 | NA | 0.38008 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | CTNNA1|WNT8A | CTNNA1 | WNT8A | 5 | 5 | 1 | 1 | 10 | 9 | 9 | 0.72 | 138223331 | 137420187 | tier1 | In-frame | 4352 | NA | 0.36632 |
| UCEC | TCGA-BK-A139-01A | TCGA-BK-A139 | DLG3|UNC5D | DLG3 | UNC5D | X | 8 | 1 | 1 | 20 | 37 | 35 | 0.54 | 69699114 | 35606045 | tier1 | In-frame | 4882 | non-validated | 0.37604 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | DLGAP4|RGMA | DLGAP4 | RGMA | 20 | 15 | 1 | -1 | 19 | 14 | 11 | 0.58 | 35091002 | 93595737 | tier1 | In-frame | 4896 | NA | 0.36426 |
| UCEC | TCGA-D1-A3DG-01A | TCGA-D1-A3DG | DNM2|QTRT1 | DNM2 | QTRT1 | 19 | 19 | 1 | 1 | 80 | 51 | 44 | 0.002 | 10829079 | 10812626 | tier1 | Out-of-frame | 4981 | NA | 0.37763 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | DNM2|SLC44A2 | DNM2 | SLC44A2 | 19 | 19 | 1 | 1 | 4 | 6 | 6 | 0.057 | 10870487 | 10736929 | tier1 | In-frame | 4988 | NA | 0.37726 |
| UCEC | TCGA-AJ-A3BF-01A | TCGA-AJ-A3BF | ECE1|WNT4 | ECE1 | WNT4 | 1 | 1 | -1 | -1 | 81 | 49 | 44 | 0.061 | 21599192 | 22448069 | tier1 | In-frame | 5260 | NA | 0.35297 |
| UCEC | TCGA-AP-A5FX-01A | TCGA-AP-A5FX | EDEM1|ITPR1 | EDEM1 | ITPR1 | 3 | 3 | 1 | 1 | 7 | 9 | 8 | 0.18 | 5236966 | 4887823 | tier1 | In-frame | 5271 | NA | 0.37189 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | ENDOD1|BBS1 | ENDOD1 | BBS1 | 11 | 11 | 1 | 1 | 3 | 4 | 3 | 0.16 | 94823391 | 66288741 | tier1 | In-frame | 5579 | NA | 0.33676 |
| UCEC | TCGA-AJ-A3I9-01A | TCGA-AJ-A3I9 | ERBB3|COX4I2 | ERBB3 | COX4I2 | 12 | 20 | 1 | 1 | 65 | 77 | 69 | 0.14 | 56474166 | 30231207 | tier1 | In-frame | 5740 | NA | 0.3844 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | ESYT3|ARMC8 | ESYT3 | ARMC8 | 3 | 3 | 1 | 1 | 3 | 1 | 1 | 0.22 | 138153967 | 137963930 | tier2 | In-frame | 5841 | NA | 0.33929 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | EYA2|SLC2A10 | EYA2 | SLC2A10 | 20 | 20 | 1 | 1 | 12 | 9 | 9 | 1.5 | 45644936 | 45353680 | tier1 | In-frame | 5944 | NA | 0.35839 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | FAM135A|GPR114 | FAM135A | GPR114 | 6 | 16 | 1 | 1 | 4 | 4 | 4 | 0.86 | 71212494 | 57595968 | tier1 | CDS-5UTR | 6054 | NA | 0.34978 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | FAM174B|PHF20 | FAM174B | PHF20 | 15 | 20 | -1 | 1 | 12 | 15 | 13 | 0.59 | 93198546 | 34430495 | tier1 | In-frame | 6108 | NA | 0.35211 |
| UCEC | TCGA-AJ-A3EM-01A | TCGA-AJ-A3EM | FAM38A|GALNS | FAM38A | GALNS | 16 | 16 | -1 | -1 | 17 | 43 | 38 | 0.66 | 88851309 | 88893246 | tier1 | Out-of-frame | 6169 | NA | 0.34107 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | FAM49B|MGAM | FAM49B | MGAM | 8 | 7 | -1 | 1 | 5 | 4 | 4 | 0.72 | 130915558 | 141705329 | tier1 | 5UTR-5UTR | 6182 | NA | 0.34699 |
| UCEC | TCGA-BG-A3PP-01A | TCGA-BG-A3PP | FCHSD2|ARHGEF17 | FCHSD2 | ARHGEF17 | 11 | 11 | -1 | 1 | 16 | 11 | 11 | 1.3 | 72578910 | 73057928 | tier1 | In-frame | 6386 | NA | 0.36967 |
| UCEC | TCGA-D1-A3DH-01A | TCGA-D1-A3DH | FCHSD2|FAM168A | FCHSD2 | FAM168A | 11 | 11 | -1 | -1 | 5 | 1 | 1 | 0.096 | 72551922 | 73179537 | tier2 | CDS-5UTR | 6394 | NA | 0.36368 |
| UCEC | TCGA-EO-A3KW-01A | TCGA-EO-A3KW | FCHSD2|FAM168A | FCHSD2 | FAM168A | 11 | 11 | -1 | -1 | 6 | 3 | 1 | 0.096 | 72851076 | 73131044 | tier2 | Out-of-frame | 6396 | NA | 0.36368 |
| UCEC | TCGA-AX-A3G3-01A | TCGA-AX-A3G3 | FGFR2|ATE1 | FGFR2 | ATE1 | 10 | 10 | -1 | -1 | 5 | 1 | 1 | 9.9 | 123298106 | 123683844 | tier2 | In-frame | 6460 | NA | 0.38131 |
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