Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-AX-A3FW-01A | TCGA-AX-A3FW | C1orf159|SDF4 | C1orf159 | SDF4 | 1 | 1 | -1 | -1 | 5 | 4 | 3 | 0.005 | 1051440 | 1159348 | tier1 | 5UTR-CDS | 2593 | NA | 0 |
| UCEC | TCGA-AJ-A3EM-01A | TCGA-AJ-A3EM | C1orf9|DNM3 | C1orf9 | DNM3 | 1 | 1 | 1 | 1 | 6 | 5 | 5 | 0.46 | 172502637 | 171956796 | tier1 | Out-of-frame | 2617 | NA | 0 |
| UCEC | TCGA-B5-A5OD-01A | TCGA-B5-A5OD | C1orf9|SND1 | C1orf9 | SND1 | 1 | 7 | 1 | 1 | 17 | 24 | 21 | 2.6 | 172502637 | 127714554 | tier1 | Out-of-frame | 2621 | NA | 0 |
| UCEC | TCGA-EY-A4KR-01A | TCGA-EY-A4KR | C4orf41|KCNN4 | C4orf41 | KCNN4 | 4 | 19 | 1 | -1 | 14 | 7 | 6 | 4.4 | 184589270 | 44276287 | tier1 | In-frame | 2728 | NA | 0 |
| UCEC | TCGA-AJ-A3BF-01A | TCGA-AJ-A3BF | CALR|TNNT1 | CALR | TNNT1 | 19 | 19 | 1 | -1 | 2 | 20 | 12 | 0.02 | 13055304 | 55646910 | tier4 | NA | 2913 | NA | 0.37192 |
| UCEC | TCGA-KP-A3W4-01A | TCGA-KP-A3W4 | CAMK2D|STAC3 | CAMK2D | STAC3 | 4 | 12 | -1 | -1 | 2 | 2 | 2 | 1.2 | 114386685 | 57638994 | tier3 | Out-of-frame | 2923 | NA | 0.38137 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | CCDC126|BTBD3 | CCDC126 | BTBD3 | 7 | 20 | 1 | 1 | 4 | 9 | 9 | 0.45 | 23651172 | 11898982 | tier1 | CDS-5UTR | 3109 | NA | 0.36003 |
| UCEC | TCGA-AX-A3FW-01A | TCGA-AX-A3FW | CCDC6|ANK3 | CCDC6 | ANK3 | 10 | 10 | -1 | -1 | 8 | 9 | 8 | 0.072 | 61665880 | 61842495 | tier1 | In-frame | 3155 | NA | 0.37389 |
| UCEC | TCGA-B5-A5OD-01A | TCGA-B5-A5OD | CCDC6|ANK3 | CCDC6 | ANK3 | 10 | 10 | -1 | -1 | 2 | 2 | 1 | 0.072 | 61564178 | 61848116 | tier2 | In-frame | 3156 | NA | 0.37389 |
| UCEC | TCGA-AJ-A3BG-01A | TCGA-AJ-A3BG | CD63|ANKS1A | CD63 | ANKS1A | 12 | 6 | -1 | 1 | 2 | 16 | 6 | 0.96 | 56119232 | 34977682 | tier3 | NA | 3284 | NA | 0.37581 |
| UCEC | TCGA-DF-A2KR-01A | TCGA-DF-A2KR | CD74|ERBB3 | CD74 | ERBB3 | 5 | 12 | -1 | 1 | 2 | 30 | 8 | 1.3 | 149781200 | 56492035 | tier3 | 3UTR-5UTR | 3291 | NA | 0.38685 |
| UCEC | TCGA-D1-A3JQ-01A | TCGA-D1-A3JQ | CDC25A|SLC26A6 | CDC25A | SLC26A6 | 3 | 3 | -1 | -1 | 16 | 14 | 11 | 1.3 | 48229268 | 48667144 | tier1 | In-frame | 3322 | NA | 0.38404 |
| UCEC | TCGA-PG-A7D5-01A | TCGA-PG-A7D5 | CDON|DCPS | CDON | DCPS | 11 | 11 | -1 | 1 | 17 | 13 | 13 | 0.039 | 125848199 | 126215242 | tier1 | Out-of-frame | 3474 | NA | 0.35945 |
| UCEC | TCGA-AX-A3G4-01A | TCGA-AX-A3G4 | CELSR2|KIAA1324 | CELSR2 | KIAA1324 | 1 | 1 | 1 | 1 | 9 | 8 | 8 | 0.37 | 109805066 | 109704516 | tier1 | Out-of-frame | 3516 | NA | 0.35717 |
| UCEC | TCGA-A5-A2K4-01A | TCGA-A5-A2K4 | CELSR2|SARS | CELSR2 | SARS | 1 | 1 | 1 | 1 | 13 | 11 | 6 | 2.5 | 109816292 | 109773500 | tier1 | Out-of-frame | 3518 | NA | 0.35907 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | CEP164|SIDT2 | CEP164 | SIDT2 | 11 | 11 | 1 | 1 | 4 | 3 | 3 | 0.25 | 117253658 | 117059424 | tier1 | Out-of-frame | 3538 | NA | 0.34412 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | CLIC4|RCAN3 | CLIC4 | RCAN3 | 1 | 1 | 1 | 1 | 2 | 6 | 5 | 0.003 | 25072116 | 24857708 | tier3 | In-frame | 3792 | NA | 0.36091 |
| UCEC | TCGA-PG-A5BC-01A | TCGA-PG-A5BC | COG4|MFI2 | COG4 | MFI2 | 16 | 3 | -1 | -1 | 18 | 5 | 5 | 0.4 | 70534861 | 196753630 | tier1 | Out-of-frame | 3970 | NA | 0.3491 |
| UCEC | TCGA-DF-A2KN-01A | TCGA-DF-A2KN | COL18A1|MYOF | COL18A1 | MYOF | 21 | 10 | 1 | -1 | 2 | 2 | 1 | 0.13 | 46933634 | 95137186 | tier4 | 3UTR-CDS | 4001 | NA | 0.36963 |
| UCEC | TCGA-AX-A3FX-01A | TCGA-AX-A3FX | CPSF3L|GNB1 | CPSF3L | GNB1 | 1 | 1 | -1 | -1 | 9 | 11 | 9 | 0.28 | 1259961 | 1724750 | tier1 | In-frame | 4147 | NA | 0.37459 |
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