Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-A5-A1OH-01A | TCGA-A5-A1OH | ADD1|PCGF3 | ADD1 | PCGF3 | 4 | 4 | 1 | 1 | 6 | 4 | 4 | 3.4 | 2845751 | 724419 | tier1 | 5UTR-5UTR | 496 | NA | 0.37171 |
| UCEC | TCGA-A5-A2K2-01A | TCGA-A5-A2K2 | ALK|GALNT14 | ALK | GALNT14 | 2 | 2 | -1 | -1 | 8 | 4 | 3 | 0.61 | 29519754 | 31152353 | tier1 | In-frame | 840 | NA | 0.38271 |
| UCEC | TCGA-EO-A3AS-01A | TCGA-EO-A3AS | ALK|SCEL | ALK | SCEL | 2 | 13 | -1 | 1 | 9 | 11 | 10 | 8.4 | 29754781 | 78202082 | tier1 | In-frame | 841 | NA | 0.38262 |
| UCEC | TCGA-BG-A3PP-01A | TCGA-BG-A3PP | ANKRD27|SLC7A9 | ANKRD27 | SLC7A9 | 19 | 19 | -1 | -1 | 26 | 6 | 6 | 0.28 | 33135231 | 33321590 | tier1 | Out-of-frame | 978 | NA | 0.3462 |
| UCEC | TCGA-EY-A2OQ-01A | TCGA-EY-A2OQ | ANKS1A|PIGN | ANKS1A | PIGN | 6 | 18 | 1 | -1 | 2 | 7 | 7 | 0.002 | 34857376 | 59713212 | tier3 | In-frame | 1004 | NA | 0.37299 |
| UCEC | TCGA-DF-A2KR-01A | TCGA-DF-A2KR | ANO7|PHC2 | ANO7 | PHC2 | 2 | 1 | 1 | -1 | 2 | 1 | 1 | 0.047 | 242157796 | 33799893 | tier3 | Out-of-frame | 1038 | NA | 0.36559 |
| UCEC | TCGA-EY-A4KR-01A | TCGA-EY-A4KR | ARID1B|EZR | ARID1B | EZR | 6 | 6 | 1 | -1 | 57 | 62 | 50 | 0.91 | 157256710 | 159210403 | tier1 | In-frame | 1352 | NA | 0.38096 |
| UCEC | TCGA-EY-A3QX-01A | TCGA-EY-A3QX | ATP2B4|PRELP | ATP2B4 | PRELP | 1 | 1 | 1 | 1 | 11 | 12 | 9 | 1.8 | 203596347 | 203452297 | tier1 | 5UTR-5UTR | 1726 | NA | 0.37757 |
| UCEC | TCGA-AX-A3G7-01A | TCGA-AX-A3G7 | ATP2B4|TFEB | ATP2B4 | TFEB | 1 | 6 | 1 | -1 | 2 | 10 | 9 | 0.83 | 203696699 | 41658973 | tier2 | CDS-5UTR | 1728 | NA | 0.37653 |
| UCEC | TCGA-D1-A3JP-01A | TCGA-D1-A3JP | B3GNT3|INSL3 | B3GNT3 | INSL3 | 19 | 19 | 1 | -1 | 8 | 20 | 13 | 0.3 | 17906015 | 17927868 | tier1 | 5UTR-CDS | 1856 | NA | 0.3462 |
| UCEC | TCGA-EY-A54A-01A | TCGA-EY-A54A | B4GALT5|SPATA2 | B4GALT5 | SPATA2 | 20 | 20 | -1 | -1 | 32 | 7 | 7 | 0.7 | 48273105 | 48525129 | tier1 | CDS-5UTR | 1879 | NA | 0.35273 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | BAZ2B|ITGB6 | BAZ2B | ITGB6 | 2 | 2 | -1 | -1 | 3 | 3 | 3 | 1.4 | 160229556 | 161030650 | tier1 | Out-of-frame | 1946 | NA | 0.37417 |
| UCEC | TCGA-AJ-A3EJ-01A | TCGA-AJ-A3EJ | BCAR3|ABCA4 | BCAR3 | ABCA4 | 1 | 1 | -1 | -1 | 139 | 107 | 102 | 0.84 | 94054534 | 94495187 | tier1 | In-frame | 1968 | NA | 0.37508 |
| UCEC | TCGA-FI-A3PV-01A | TCGA-FI-A3PV | BCOR|PHEX | BCOR | PHEX | X | X | -1 | 1 | 12 | 6 | 3 | 1.4 | 40036260 | 22231021 | tier1 | 5UTR-CDS | 2052 | NA | 0.37037 |
| UCEC | TCGA-EY-A3L3-01A | TCGA-EY-A3L3 | BMPR1A|C10orf11 | BMPR1A | C10orf11 | 10 | 10 | 1 | 1 | 105 | 333 | 178 | 0.44 | 88659883 | 77818424 | tier1 | In-frame | 2132 | NA | 0 |
| UCEC | TCGA-EO-A3B0-01A | TCGA-EO-A3B0 | BSG|CCT5 | BSG | CCT5 | 19 | 5 | 1 | 1 | 2 | 24 | 5 | 0.91 | 583492 | 10250033 | tier3 | 3UTR-5UTR | 2246 | NA | 0.37258 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | BTBD3|CCDC126 | BTBD3 | CCDC126 | 20 | 7 | 1 | 1 | 7 | 5 | 5 | 0.45 | 11871602 | 23682550 | tier1 | 5UTR-CDS | 2268 | NA | 0.36003 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | C11orf49|PACSIN3 | C11orf49 | PACSIN3 | 11 | 11 | 1 | -1 | 3 | 3 | 3 | 0.47 | 47159280 | 47204620 | tier1 | CDS-5UTR | 2390 | NA | 0 |
| UCEC | TCGA-AJ-A3EM-01A | TCGA-AJ-A3EM | C17orf63|RAB5C | C17orf63 | RAB5C | 17 | 17 | -1 | -1 | 141 | 27 | 24 | 3.2 | 27139227 | 40282608 | tier1 | 5UTR-5UTR | 2520 | NA | 0 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | C19orf25|CACNA1C | C19orf25 | CACNA1C | 19 | 12 | -1 | 1 | 2 | 2 | 2 | 0.085 | 1478773 | 2705040 | tier2 | Out-of-frame | 2571 | NA | 0 |
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