Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| THYM | TCGA-ZB-A96L-01A | TCGA-ZB-A96L | DOCK3|TMIGD2 | DOCK3 | TMIGD2 | 3 | 19 | 1 | -1 | 15 | 9 | 2 | 1.3 | 50971508 | 4294813 | tier1 | Out-of-frame | 5032 | NA | 0.36685 |
| THYM | TCGA-ZB-A96L-01A | TCGA-ZB-A96L | EPHA3|ABCA9 | EPHA3 | ABCA9 | 3 | 17 | 1 | -1 | 9 | 6 | 5 | 0.11 | 89480509 | 67047280 | tier1 | CDS-5UTR | 5669 | NA | 0.38168 |
| THYM | TCGA-XU-A92U-01A | TCGA-XU-A92U | GNAS|FOXP1 | GNAS | FOXP1 | 20 | 3 | 1 | -1 | 2 | 104 | 27 | 3.3 | 57486241 | 71007472 | tier4 | NA | 7192 | NA | 0.37906 |
| THYM | TCGA-ZB-A961-01A | TCGA-ZB-A961 | HDAC5|SLC13A2 | HDAC5 | SLC13A2 | 17 | 17 | -1 | 1 | 12 | 6 | 6 | 0.003 | 42188097 | 26816232 | tier1 | Out-of-frame | 7626 | NA | 0.37339 |
| THYM | TCGA-ZB-A965-01A | TCGA-ZB-A965 | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 20 | 9 | 8 | 0.3 | 135586622 | 135572292 | tier1 | Out-of-frame | 8028 | NA | 0.3803 |
| THYM | TCGA-ZB-A962-01A | TCGA-ZB-A962 | ITM2C|FOXP1 | ITM2C | FOXP1 | 2 | 3 | 1 | -1 | 2 | 3 | 3 | 0.53 | 231743962 | 71007472 | tier4 | NA | 8428 | NA | 0.36176 |
| THYM | TCGA-ZB-A969-01A | TCGA-ZB-A969 | ITSN1|C21orf7 | ITSN1 | C21orf7 | 21 | 21 | 1 | 1 | 171 | 198 | 187 | 0.36 | 35015019 | 30532262 | tier1 | 5UTR-CDS | 8459 | NA | 0 |
| THYM | TCGA-ZB-A96L-01A | TCGA-ZB-A96L | KCNQ3|ZHX2 | KCNQ3 | ZHX2 | 8 | 8 | -1 | 1 | 2 | 1 | 1 | 3.1 | 133492394 | 123963532 | tier4 | CDS-5UTR | 8605 | NA | 0.36857 |
| THYM | TCGA-ZB-A969-01A | TCGA-ZB-A969 | MAGI1|MITF | MAGI1 | MITF | 3 | 3 | -1 | 1 | 18 | 8 | 8 | 2.9 | 66023671 | 69998202 | tier1 | Out-of-frame | 9768 | NA | 0.38087 |
| THYM | TCGA-ZB-A969-01A | TCGA-ZB-A969 | PRDM2|LRRC38 | PRDM2 | LRRC38 | 1 | 1 | 1 | -1 | 9 | 6 | 6 | 0.015 | 14075982 | 13802567 | tier1 | In-frame | 13502 | NA | 0.36978 |
| THYM | TCGA-ZB-A96H-01A | TCGA-ZB-A96H | VASP|C1orf87 | VASP | C1orf87 | 19 | 1 | 1 | -1 | 7 | 12 | 12 | 0.013 | 46011034 | 60506803 | tier1 | Out-of-frame | 19511 | NA | 0 |
| THYM | TCGA-ZB-A963-01A | TCGA-ZB-A963 | ZNRF3|MYO18B | ZNRF3 | MYO18B | 22 | 22 | 1 | 1 | 2 | 2 | 1 | 0.014 | 29280054 | 26219472 | tier1 | Out-of-frame | 20704 | NA | 0 |
| UCEC | TCGA-B5-A3FB-01A | TCGA-B5-A3FB | ABCG1|BACE2 | ABCG1 | BACE2 | 21 | 21 | 1 | 1 | 28 | 8 | 6 | 0.11 | 43708422 | 42598193 | tier1 | In-frame | 78 | NA | 0.35531 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | AC087465.1|ANGPT1 | AC087465.1 | ANGPT1 | 15 | 8 | -1 | -1 | 7 | 13 | 12 | 0.003 | 77544709 | 108359325 | tier1 | 5UTR-CDS | 199 | NA | 0.36763 |
| UCEC | TCGA-A5-A3LP-01A | TCGA-A5-A3LP | ACTN1|DCAF5 | ACTN1 | DCAF5 | 14 | 14 | -1 | -1 | 11 | 9 | 8 | 0.066 | 69445669 | 69529228 | tier1 | Out-of-frame | 371 | NA | 0.3742 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | ACVR1|CCDC148 | ACVR1 | CCDC148 | 2 | 2 | -1 | -1 | 2 | 3 | 2 | 0.34 | 158655939 | 159145348 | tier4 | Out-of-frame | 392 | NA | 0.37698 |
| UCEC | TCGA-AJ-A3QS-01A | TCGA-AJ-A3QS | ADAM22|RUNDC3B | ADAM22 | RUNDC3B | 7 | 7 | 1 | 1 | 2 | 4 | 4 | 0.11 | 87607727 | 87445456 | tier3 | In-frame | 414 | NA | 0.36299 |
| UCEC | TCGA-AJ-A23N-01A | TCGA-AJ-A23N | ADAP1|COX19 | ADAP1 | COX19 | 7 | 7 | -1 | -1 | 47 | 40 | 18 | 0.31 | 959605 | 1009092 | tier1 | Out-of-frame | 451 | NA | 0.37374 |
| UCEC | TCGA-PG-A7D5-01A | TCGA-PG-A7D5 | ADCY9|CLUAP1 | ADCY9 | CLUAP1 | 16 | 16 | -1 | 1 | 3 | 9 | 7 | 0.45 | 4163751 | 3573158 | tier1 | Out-of-frame | 474 | NA | 0.35019 |
| UCEC | TCGA-B5-A1MS-01B | TCGA-B5-A1MS | ADCY9|FAM65C | ADCY9 | FAM65C | 16 | 20 | -1 | -1 | 9 | 2 | 2 | 0.35 | 4163751 | 49247393 | tier1 | CDS-5UTR | 476 | NA | 0.34986 |
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