Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| THCA | TCGA-BJ-A45I-01A | TCGA-BJ-A45I | S100A6|PLEKHB2 | S100A6 | PLEKHB2 | 1 | 2 | -1 | 1 | 2 | 662 | 554 | 1.3 | 153507075 | 131876464 | tier3 | 3UTR-5UTR | 15240 | NA | 0 |
| THCA | TCGA-CE-A483-01A | TCGA-CE-A483 | S100A6|PLEKHB2 | S100A6 | PLEKHB2 | 1 | 2 | -1 | 1 | 2 | 359 | 292 | 1.3 | 153507075 | 131876464 | tier3 | 3UTR-5UTR | 15241 | NA | 0 |
| THCA | TCGA-DJ-A2Q3-01A | TCGA-DJ-A2Q3 | SEC16A|NOTCH1 | SEC16A | NOTCH1 | 9 | 9 | -1 | -1 | 4 | 7 | 4 | 0.069 | 139357339 | 139438554 | tier1 | Out-of-frame | 15497 | NA | 0 |
| THCA | TCGA-FE-A232-01A | TCGA-FE-A232 | SLAMF1|CD1A | SLAMF1 | CD1A | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 1 | 160616660 | 158224874 | tier3 | In-frame | 16002 | NA | 0 |
| THCA | TCGA-FE-A231-01A | TCGA-FE-A231 | SLC34A2|CLDN7 | SLC34A2 | CLDN7 | 4 | 17 | 1 | -1 | 2 | 1 | 1 | 0.29 | 25680370 | 7166264 | tier3 | 3UTR-5UTR | 16149 | NA | 0 |
| THCA | TCGA-IM-A3U3-01A | TCGA-IM-A3U3 | SLC34A2|CLDN7 | SLC34A2 | CLDN7 | 4 | 17 | 1 | -1 | 2 | 2 | 2 | 0.29 | 25680370 | 7166264 | tier3 | 3UTR-5UTR | 16150 | NA | 0 |
| THCA | TCGA-CE-A485-01A | TCGA-CE-A485 | SPECC1L|RET | SPECC1L | RET | 22 | 10 | 1 | 1 | 48 | 21 | 17 | 0.39 | 24734445 | 43612032 | tier1 | In-frame | 16700 | NA | 0 |
| THCA | TCGA-ET-A40S-01A | TCGA-ET-A40S | SQSTM1|NTRK1 | SQSTM1 | NTRK1 | 5 | 1 | 1 | 1 | 699 | 433 | 349 | 1 | 179252226 | 156844363 | tier1 | In-frame | 16812 | NA | 0 |
| THCA | TCGA-CE-A3MD-01A | TCGA-CE-A3MD | SSBP2|NTRK1 | SSBP2 | NTRK1 | 5 | 1 | -1 | 1 | 154 | 87 | 81 | 0.84 | 80742687 | 156845312 | tier1 | In-frame | 16907 | NA | 0 |
| THCA | TCGA-DJ-A3US-01A | TCGA-DJ-A3US | STRN|ALK | STRN | ALK | 2 | 2 | -1 | -1 | 13 | 16 | 14 | 0.52 | 37143221 | 29446394 | tier1 | In-frame | 17107 | validated | 0 |
| THCA | TCGA-ET-A40R-01A | TCGA-ET-A40R | TBL1XR1|RET | TBL1XR1 | RET | 3 | 10 | -1 | 1 | 66 | 38 | 35 | 5.6 | 176765088 | 43612032 | tier1 | In-frame | 17555 | NA | 0 |
| THCA | TCGA-FK-A3S3-01A | TCGA-FK-A3S3 | TFG|MET | TFG | MET | 3 | 7 | 1 | 1 | 14 | 10 | 8 | 1.6 | 100451516 | 116414935 | tier1 | In-frame | 17722 | validated | 0 |
| THCA | TCGA-EM-A3AO-01A | TCGA-EM-A3AO | TFG|NTRK1 | TFG | NTRK1 | 3 | 1 | 1 | 1 | 67 | 172 | 158 | 100 | 100455560 | 156844363 | tier1 | In-frame | 17723 | NA | 0 |
| THCA | TCGA-EL-A3D4-01A | TCGA-EL-A3D4 | TPM3|NTRK1 | TPM3 | NTRK1 | 1 | 1 | -1 | 1 | 18 | 76 | 69 | 3.7 | 154142876 | 156844363 | tier1 | In-frame | 18492 | NA | 0 |
| THCA | TCGA-CE-A481-01A | TCGA-CE-A481 | TRIM27|RET | TRIM27 | RET | 6 | 10 | -1 | 1 | 70 | 30 | 25 | 2.1 | 28887789 | 43612032 | tier1 | In-frame | 18626 | NA | 0 |
| THCA | TCGA-FY-A3R6-01A | TCGA-FY-A3R6 | UACA|LTK | UACA | LTK | 15 | 15 | -1 | -1 | 54 | 25 | 24 | 0.78 | 70957001 | 41799372 | tier1 | Out-of-frame | 19014 | NA | 0 |
| THCA | TCGA-EM-A3FP-01A | TCGA-EM-A3FP | VCL|FGFR2 | VCL | FGFR2 | 10 | 10 | 1 | -1 | 13 | 16 | 14 | 0.92 | 75758133 | 123239535 | tier1 | In-frame | 19533 | NA | 0 |
| THCA | TCGA-EM-A3AQ-01A | TCGA-EM-A3AQ | WARS|CCNY | WARS | CCNY | 14 | 10 | -1 | 1 | 13 | 8 | 8 | 0.44 | 100828045 | 35772332 | tier1 | CDS-5UTR | 19706 | validated | 0 |
| THYM | TCGA-ZL-A9V6-01A | TCGA-ZL-A9V6 | APLP2|TYK2 | APLP2 | TYK2 | 11 | 19 | 1 | -1 | 2 | 10 | 6 | 0.16 | 130014699 | 10491352 | tier3 | 3UTR-5UTR | 1131 | NA | 0.37895 |
| THYM | TCGA-ZB-A96E-01A | TCGA-ZB-A96E | CD81|TYK2 | CD81 | TYK2 | 11 | 19 | 1 | -1 | 2 | 2 | 2 | 0.066 | 2418627 | 10491352 | tier3 | 3UTR-5UTR | 3306 | NA | 0.37646 |
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