Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| THCA | TCGA-EM-A4FK-01A | TCGA-EM-A4FK | IYD|BIRC6 | IYD | BIRC6 | 6 | 2 | 1 | 1 | 2 | 5 | 3 | 0.4 | 150725764 | 32820101 | tier4 | 3UTR-CDS | 8467 | NA | 0.36768 |
| THCA | TCGA-FE-A239-01A | TCGA-FE-A239 | LMBRD1|LGSN | LMBRD1 | LGSN | 6 | 6 | -1 | -1 | 25 | 19 | 19 | 1.4 | 70428848 | 64004950 | tier1 | In-frame | 9395 | NA | 0.33283 |
| THCA | TCGA-BJ-A291-01A | TCGA-BJ-A291 | LRP8|PAX8 | LRP8 | PAX8 | 1 | 2 | -1 | -1 | 317 | 311 | 276 | 0.65 | 53723991 | 114004496 | tier1 | In-frame | 9550 | NA | 0.37567 |
| THCA | TCGA-DE-A0Y2-01A | TCGA-DE-A0Y2 | MACF1|BRAF | MACF1 | BRAF | 1 | 7 | 1 | -1 | 163 | 167 | 154 | 2.1 | 39896580 | 140487384 | tier1 | In-frame | 9726 | NA | 0.39015 |
| THCA | TCGA-FK-A3S3-01A | TCGA-FK-A3S3 | MET|TFG | MET | TFG | 7 | 3 | 1 | 1 | 1204 | 727 | 646 | 1.6 | 116412043 | 100455420 | tier1 | In-frame | 10259 | validated | 0.38121 |
| THCA | TCGA-ET-A25G-01A | TCGA-ET-A25G | MYH9|BIRC6 | MYH9 | BIRC6 | 22 | 2 | -1 | 1 | 2 | 3 | 2 | 1.2 | 36677327 | 32820101 | tier4 | 3UTR-CDS | 10895 | NA | 0.38434 |
| THCA | TCGA-CE-A482-01A | TCGA-CE-A482 | NCOA4|RET | NCOA4 | RET | 10 | 10 | 1 | 1 | 123 | 59 | 46 | 0.22 | 51582939 | 43612032 | tier1 | In-frame | 11213 | NA | 0.38899 |
| THCA | TCGA-DE-A3KN-01A | TCGA-DE-A3KN | NCOA4|RET | NCOA4 | RET | 10 | 10 | 1 | 1 | 106 | 44 | 42 | 0.22 | 51582939 | 43612032 | tier1 | In-frame | 11214 | non-validated | 0.38899 |
| THCA | TCGA-EL-A3H3-01A | TCGA-EL-A3H3 | NCOA4|RET | NCOA4 | RET | 10 | 10 | 1 | 1 | 63 | 35 | 35 | 0.22 | 51582939 | 43612032 | tier1 | In-frame | 11215 | NA | 0.38899 |
| THCA | TCGA-EM-A2CU-01A | TCGA-EM-A2CU | NCOA4|RET | NCOA4 | RET | 10 | 10 | 1 | 1 | 104 | 46 | 34 | 0.22 | 51582939 | 43612032 | tier1 | In-frame | 11216 | non-validated | 0.38899 |
| THCA | TCGA-E8-A438-01A | TCGA-E8-A438 | NTRK3|ETV6 | NTRK3 | ETV6 | 15 | 12 | -1 | 1 | 8 | 5 | 5 | 5.5 | 88669502 | 12022358 | tier1 | In-frame | 11841 | NA | 0.39062 |
| THCA | TCGA-ET-A39L-01A | TCGA-ET-A39L | NTRK3|RBPMS | NTRK3 | RBPMS | 15 | 8 | -1 | 1 | 133 | 75 | 70 | 0.004 | 88669502 | 30402011 | tier1 | In-frame | 11842 | NA | 0.39128 |
| THCA | TCGA-DJ-A2Q4-01A | TCGA-DJ-A2Q4 | OS9|ERBB3 | OS9 | ERBB3 | 12 | 12 | 1 | 1 | 2 | 5 | 5 | 0.013 | 58115338 | 56492035 | tier3 | 3UTR-5UTR | 12058 | NA | 0.38305 |
| THCA | TCGA-EM-A2CL-01A | TCGA-EM-A2CL | PLVAP|ABCF1 | PLVAP | ABCF1 | 19 | 6 | -1 | 1 | 2 | 3 | 2 | 0.28 | 17462264 | 30545853 | tier3 | 3UTR-CDS | 13051 | NA | 0.36325 |
| THCA | TCGA-DJ-A3UK-01A | TCGA-DJ-A3UK | PLVAP|FOXP1 | PLVAP | FOXP1 | 19 | 3 | -1 | -1 | 2 | 36 | 25 | 0.17 | 17462264 | 71007472 | tier3 | NA | 13053 | NA | 0.35965 |
| THCA | TCGA-ET-A39L-01A | TCGA-ET-A39L | RBPMS|NTRK3 | RBPMS | NTRK3 | 8 | 15 | 1 | -1 | 78 | 42 | 38 | 0.004 | 30361953 | 88576276 | tier1 | In-frame | 14495 | NA | 0 |
| THCA | TCGA-E8-A44M-01A | TCGA-E8-A44M | RET|ANK3 | RET | ANK3 | 10 | 10 | 1 | -1 | 6 | 5 | 4 | 0.07 | 43604678 | 61789584 | tier1 | CDS-3UTR | 14567 | NA | 0 |
| THCA | TCGA-DJ-A4V5-01A | TCGA-DJ-A4V5 | RET|CCDC6 | RET | CCDC6 | 10 | 10 | 1 | -1 | 3 | 1 | 1 | 0.34 | 43610184 | 61612460 | tier3 | In-frame | 14568 | NA | 0 |
| THCA | TCGA-CE-A482-01A | TCGA-CE-A482 | RET|NCOA4 | RET | NCOA4 | 10 | 10 | 1 | 1 | 9 | 3 | 3 | 0.22 | 43610184 | 51584616 | tier1 | In-frame | 14569 | NA | 0 |
| THCA | TCGA-EL-A4KG-01A | TCGA-EL-A4KG | S100A6|BCL7A | S100A6 | BCL7A | 1 | 12 | -1 | 1 | 2 | 3 | 3 | 0.15 | 153507075 | 122473237 | tier3 | 3UTR-CDS | 15234 | NA | 0 |
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