TCSA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the GESPs in each cancer type

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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
THCA	TCGA-ET-A3DR-01A	TCGA-ET-A3DR	CCDC6\|RET	CCDC6	RET	10	10	-1	1	89	47	42	0.34	61665880	43612032	tier1	In-frame	3170	NA	0.38748
THCA	TCGA-FK-A3SE-01A	TCGA-FK-A3SE	CCDC6\|RET	CCDC6	RET	10	10	-1	1	228	121	115	0.34	61665880	43612032	tier1	In-frame	3171	validated	0.38748
THCA	TCGA-EM-A3AQ-01A	TCGA-EM-A3AQ	CCNY\|BRAF	CCNY	BRAF	10	7	1	-1	3	2	2	0.35	35626135	140482957	tier1	In-frame	3235	validated	0.38633
THCA	TCGA-ET-A40S-01A	TCGA-ET-A40S	CD74\|SUPT16H	CD74	SUPT16H	5	14	-1	-1	2	61	7	0.007	149781200	21829491	tier3	3UTR-CDS	3296	NA	0.37847
THCA	TCGA-H2-A2K9-01A	TCGA-H2-A2K9	CNPY3\|TPO	CNPY3	TPO	6	2	1	1	2	15	10	0.33	42902336	1417252	tier4	CDS-5UTR	3942	NA	0.3387
THCA	TCGA-BJ-A28Z-01A	TCGA-BJ-A28Z	CSGALNACT2\|SLC16A9	CSGALNACT2	SLC16A9	10	10	1	-1	15	6	6	0.55	43651258	61414347	tier1	In-frame	4268	NA	0.34059
THCA	TCGA-DE-A69K-01A	TCGA-DE-A69K	DLG5\|RET	DLG5	RET	10	10	-1	1	154	99	90	0.035	79588640	43612032	tier4	In-frame	4890	NA	0.39099
THCA	TCGA-ET-A3DR-01A	TCGA-ET-A3DR	EEF2\|ERBB3	EEF2	ERBB3	19	12	-1	1	2	24	24	0.055	3976055	56492035	tier4	3UTR-5UTR	5307	NA	0.38579
THCA	TCGA-E8-A432-01A	TCGA-E8-A432	EML4\|ALK	EML4	ALK	2	2	1	-1	57	47	29	0.35	42492091	29449940	tier1	In-frame	5564	NA	0.38609
THCA	TCGA-EL-A3T9-01A	TCGA-EL-A3T9	ERC1\|RET	ERC1	RET	12	10	1	1	22	14	13	0.55	1346070	43612032	tier1	In-frame	5752	validated	0.38876
THCA	TCGA-EM-A3FQ-01A	TCGA-EM-A3FQ	ERC1\|RET	ERC1	RET	12	10	1	1	10	17	14	0.55	1553916	43612032	tier1	In-frame	5753	validated	0.38876
THCA	TCGA-4C-A93U-01A	TCGA-4C-A93U	ERRFI1\|CACNA1E	ERRFI1	CACNA1E	1	1	-1	1	5	13	13	0.51	8086218	181546902	tier1	5UTR-CDS	5792	NA	0.36954
THCA	TCGA-CE-A27D-01A	TCGA-CE-A27D	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	33	12	10	5.5	12006495	88576276	tier1	In-frame	5869	NA	0.39062
THCA	TCGA-DJ-A3UV-01A	TCGA-DJ-A3UV	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	26	15	14	5.5	12006495	88576276	tier1	In-frame	5872	NA	0.39062
THCA	TCGA-DJ-A4V0-01A	TCGA-DJ-A4V0	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	11	10	8	5.5	12006495	88576276	tier1	In-frame	5873	NA	0.39062
THCA	TCGA-E8-A438-01A	TCGA-E8-A438	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	15	12	10	5.5	12006495	88576276	tier1	In-frame	5874	NA	0.39062
THCA	TCGA-EL-A3ZN-01A	TCGA-EL-A3ZN	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	13	16	13	5.5	12006495	88576276	tier1	In-frame	5876	NA	0.39062
THCA	TCGA-FE-A3PD-01A	TCGA-FE-A3PD	ETV6\|NTRK3	ETV6	NTRK3	12	15	1	-1	44	22	22	5.5	12006495	88576276	tier1	In-frame	5877	non-validated	0.39062
THCA	TCGA-BJ-A0Z0-01A	TCGA-BJ-A0Z0	FGFR2\|OFD1	FGFR2	OFD1	10	X	-1	1	53	41	38	2.2	123243212	13754597	tier1	In-frame	6470	NA	0.3833
THCA	TCGA-ET-A3DQ-01A	TCGA-ET-A3DQ	FKBP15\|RET	FKBP15	RET	9	10	-1	1	14	6	6	0.51	115932802	43612032	tier1	In-frame	6548	NA	0.38736

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