Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| THCA | TCGA-ET-A2N3-01B | TCGA-ET-A2N3 | ANKRD11|DPEP1 | ANKRD11 | DPEP1 | 16 | 16 | -1 | 1 | 2 | 3 | 2 | 0.013 | 89556653 | 89696713 | tier4 | 5UTR-5UTR | 946 | NA | 0.37832 |
| THCA | TCGA-IM-A3ED-01A | TCGA-IM-A3ED | AP2M1|SEC63 | AP2M1 | SEC63 | 3 | 6 | 1 | -1 | 2 | 2 | 2 | 0.48 | 183901878 | 108214782 | tier4 | NA | 1084 | NA | 0.36922 |
| THCA | TCGA-DJ-A3V9-01A | TCGA-DJ-A3V9 | APLP2|C7 | APLP2 | C7 | 11 | 5 | 1 | 1 | 2 | 291 | 238 | 0.56 | 130014699 | 40954982 | tier3 | NA | 1121 | NA | 0.3763 |
| THCA | TCGA-EL-A3TB-01A | TCGA-EL-A3TB | APLP2|CD40 | APLP2 | CD40 | 11 | 20 | 1 | 1 | 2 | 42 | 31 | 2.7 | 130014699 | 44754189 | tier2 | NA | 1124 | non-validated | 0.38169 |
| THCA | TCGA-BJ-A45I-01A | TCGA-BJ-A45I | APLP2|EEA1 | APLP2 | EEA1 | 11 | 12 | 1 | -1 | 2 | 117 | 85 | 0.38 | 130014699 | 93229203 | tier3 | NA | 1125 | NA | 0.37909 |
| THCA | TCGA-DJ-A13S-01A | TCGA-DJ-A13S | APP|SEC63 | APP | SEC63 | 21 | 6 | -1 | -1 | 2 | 1 | 1 | 0.067 | 27252862 | 108214782 | tier3 | NA | 1152 | NA | 0.38188 |
| THCA | TCGA-ET-A25M-01A | TCGA-ET-A25M | BGN|ERBB3 | BGN | ERBB3 | X | 12 | 1 | 1 | 2 | 1 | 1 | 1.8 | 152775004 | 56492035 | tier3 | 3UTR-5UTR | 2078 | NA | 0.38587 |
| THCA | TCGA-DE-A0Y2-01A | TCGA-DE-A0Y2 | BRAF|MACF1 | BRAF | MACF1 | 7 | 1 | -1 | 1 | 31 | 16 | 15 | 2.1 | 140494108 | 39898207 | tier1 | In-frame | 2185 | NA | 0.39015 |
| THCA | TCGA-EM-A3AL-01A | TCGA-EM-A3AL | BSG|EEA1 | BSG | EEA1 | 19 | 12 | 1 | -1 | 2 | 2 | 2 | 0.005 | 583492 | 93229203 | tier3 | NA | 2247 | non-validated | 0.37582 |
| THCA | TCGA-DJ-A2Q7-01A | TCGA-DJ-A2Q7 | CALR|PLEKHB2 | CALR | PLEKHB2 | 19 | 2 | 1 | 1 | 2 | 3 | 1 | 1 | 13055304 | 131876464 | tier3 | 3UTR-5UTR | 2912 | NA | 0.36937 |
| THCA | TCGA-BJ-A0ZJ-01A | TCGA-BJ-A0ZJ | CCDC6|RET | CCDC6 | RET | 10 | 10 | -1 | 1 | 84 | 40 | 39 | 0.34 | 61665880 | 43612032 | tier1 | In-frame | 3160 | NA | 0.38748 |
| THCA | TCGA-BJ-A28Z-01A | TCGA-BJ-A28Z | CCDC6|RET | CCDC6 | RET | 10 | 10 | -1 | 1 | 58 | 23 | 17 | 0.34 | 61665880 | 43612032 | tier1 | In-frame | 3161 | NA | 0.38748 |
| THCA | TCGA-CE-A13K-01A | TCGA-CE-A13K | CCDC6|RET | CCDC6 | RET | 10 | 10 | -1 | 1 | 65 | 31 | 30 | 0.34 | 61554231 | 43612032 | tier1 | In-frame | 3162 | NA | 0.38748 |
| THCA | TCGA-DJ-A3V3-01A | TCGA-DJ-A3V3 | CCDC6|RET | CCDC6 | RET | 10 | 10 | -1 | 1 | 64 | 48 | 42 | 0.34 | 61665880 | 43612032 | tier1 | In-frame | 3163 | NA | 0.38748 |
| THCA | TCGA-DJ-A4UQ-01A | TCGA-DJ-A4UQ | CCDC6|RET | CCDC6 | RET | 10 | 10 | -1 | 1 | 80 | 54 | 49 | 0.34 | 61665880 | 43612032 | tier1 | In-frame | 3164 | NA | 0.38748 |
| THCA | TCGA-DJ-A4V5-01A | TCGA-DJ-A4V5 | CCDC6|RET | CCDC6 | RET | 10 | 10 | -1 | 1 | 83 | 81 | 70 | 0.34 | 61665880 | 43612032 | tier1 | In-frame | 3165 | NA | 0.38748 |
| THCA | TCGA-DO-A1JZ-01A | TCGA-DO-A1JZ | CCDC6|RET | CCDC6 | RET | 10 | 10 | -1 | 1 | 103 | 66 | 61 | 0.34 | 61665880 | 43612032 | tier1 | In-frame | 3166 | NA | 0.38748 |
| THCA | TCGA-E3-A3E0-01A | TCGA-E3-A3E0 | CCDC6|RET | CCDC6 | RET | 10 | 10 | -1 | 1 | 122 | 75 | 70 | 0.34 | 61665880 | 43612032 | tier1 | In-frame | 3167 | NA | 0.38748 |
| THCA | TCGA-EL-A3TB-01A | TCGA-EL-A3TB | CCDC6|RET | CCDC6 | RET | 10 | 10 | -1 | 1 | 106 | 76 | 72 | 0.34 | 61665880 | 43612032 | tier1 | In-frame | 3168 | validated | 0.38748 |
| THCA | TCGA-EL-A3ZP-01A | TCGA-EL-A3ZP | CCDC6|RET | CCDC6 | RET | 10 | 10 | -1 | 1 | 55 | 7 | 7 | 0.34 | 61665880 | 43612032 | tier1 | In-frame | 3169 | NA | 0.38748 |
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