Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| TGCT | TCGA-4K-AA1G-01A | TCGA-4K-AA1G | GMCL1|DYSF | GMCL1 | DYSF | 2 | 2 | 1 | 1 | 2 | 5 | 5 | 0.29 | 70057284 | 71708013 | tier2 | Out-of-frame | 7138 | NA | 0.36516 |
| TGCT | TCGA-2G-AAKH-01A | TCGA-2G-AAKH | GNB1|C1orf222 | GNB1 | C1orf222 | 1 | 1 | -1 | -1 | 8 | 8 | 8 | 0.53 | 1756836 | 1861775 | tier4 | NA | 7210 | NA | 0 |
| TGCT | TCGA-2G-AAKD-01A | TCGA-2G-AAKD | GPC4|GPC3 | GPC4 | GPC3 | X | X | -1 | -1 | 21 | 15 | 15 | 0.003 | 132548834 | 132670321 | tier1 | In-frame | 7326 | NA | 0.36085 |
| TGCT | TCGA-2G-AAGX-01A | TCGA-2G-AAGX | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 11 | 8 | 8 | 0.3 | 135586622 | 135572292 | tier1 | Out-of-frame | 8020 | NA | 0.3803 |
| TGCT | TCGA-YU-AA4L-01A | TCGA-YU-AA4L | ITGA9|ZNF48 | ITGA9 | ZNF48 | 3 | 16 | 1 | 1 | 6 | 9 | 9 | 3.2 | 37584076 | 30407101 | tier1 | NA | 8389 | NA | 0.36911 |
| TGCT | TCGA-2G-AAGT-01A | TCGA-2G-AAGT | KIF21A|CPM | KIF21A | CPM | 12 | 12 | -1 | -1 | 8 | 5 | 5 | 0.13 | 39836729 | 69279669 | tier2 | Out-of-frame | 8972 | NA | 0.35136 |
| TGCT | TCGA-2G-AAFV-01A | TCGA-2G-AAFV | LIN28A|CD52 | LIN28A | CD52 | 1 | 1 | 1 | 1 | 18 | 11 | 11 | 0.79 | 26738073 | 26646662 | tier1 | In-frame | 9354 | NA | 0.33554 |
| TGCT | TCGA-S6-A8JY-01A | TCGA-S6-A8JY | LRP6|LRRC23 | LRP6 | LRRC23 | 12 | 12 | -1 | 1 | 38 | 31 | 29 | 0.58 | 12397196 | 7014749 | tier1 | CDS-5UTR | 9545 | NA | 0.3706 |
| TGCT | TCGA-XE-AANI-01A | TCGA-XE-AANI | LRP6|MANSC1 | LRP6 | MANSC1 | 12 | 12 | -1 | -1 | 22 | 24 | 23 | 0.94 | 12397196 | 12496348 | tier1 | CDS-5UTR | 9547 | NA | 0.36738 |
| TGCT | TCGA-2G-AAH8-01A | TCGA-2G-AAH8 | MAP4|NME6 | MAP4 | NME6 | 3 | 3 | -1 | -1 | 13 | 5 | 5 | 0.18 | 48019355 | 48338319 | tier1 | Out-of-frame | 9889 | NA | 0.36234 |
| TGCT | TCGA-XE-AANJ-01A | TCGA-XE-AANJ | MAP4|ODZ4 | MAP4 | ODZ4 | 3 | 11 | -1 | -1 | 24 | 26 | 24 | 1.3 | 47956307 | 78781054 | tier1 | CDS-5UTR | 9891 | NA | 0.36868 |
| TGCT | TCGA-S6-A8JY-01A | TCGA-S6-A8JY | PDCL|NCS1 | PDCL | NCS1 | 9 | 9 | -1 | 1 | 3 | 3 | 3 | 0.5 | 125590750 | 132980111 | tier1 | 5UTR-CDS | 12457 | NA | 0.36332 |
| TGCT | TCGA-2G-AAG6-01A | TCGA-2G-AAG6 | PPAP2A|SLC38A9 | PPAP2A | SLC38A9 | 5 | 5 | -1 | -1 | 4 | 6 | 6 | 0.8 | 54763697 | 54968523 | tier1 | In-frame | 13212 | NA | 0.3538 |
| TGCT | TCGA-2G-AAKH-01A | TCGA-2G-AAKH | PPFIBP1|SLCO1B1 | PPFIBP1 | SLCO1B1 | 12 | 12 | 1 | 1 | 28 | 43 | 38 | 0.14 | 27677298 | 21294448 | tier1 | 5UTR-5UTR | 13285 | NA | 0.36469 |
| TGCT | TCGA-YU-A94I-01A | TCGA-YU-A94I | PTK2B|SLC5A1 | PTK2B | SLC5A1 | 8 | 22 | 1 | 1 | 2 | 5 | 4 | 3 | 27183198 | 32462922 | tier3 | 5UTR-CDS | 13790 | NA | 0.3854 |
| TGCT | TCGA-2G-AAFI-01A | TCGA-2G-AAFI | SF3B3|ADAM12 | SF3B3 | ADAM12 | 16 | 10 | 1 | -1 | 12 | 22 | 15 | 2 | 70604052 | 127967557 | tier2 | In-frame | 15728 | NA | 0 |
| TGCT | TCGA-2G-AAH8-01A | TCGA-2G-AAH8 | ST7|MET | ST7 | MET | 7 | 7 | 1 | 1 | 2 | 1 | 1 | 0.69 | 116593745 | 116339125 | tier4 | CDS-5UTR | 16963 | NA | 0 |
| TGCT | TCGA-2G-AALW-01A | TCGA-2G-AALW | TJP2|FXN | TJP2 | FXN | 9 | 9 | 1 | 1 | 2 | 2 | 2 | 1.5 | 71766687 | 71714817 | tier2 | 5UTR-CDS | 17841 | NA | 0 |
| TGCT | TCGA-XE-A8H4-01A | TCGA-XE-A8H4 | TNK2|MFI2 | TNK2 | MFI2 | 3 | 3 | -1 | -1 | 47 | 49 | 46 | 0.64 | 195635356 | 196737665 | tier1 | 5UTR-CDS | 18353 | NA | 0 |
| THCA | TCGA-FK-A3SG-01A | TCGA-FK-A3SG | AKAP13|RET | AKAP13 | RET | 15 | 10 | 1 | 1 | 224 | 214 | 196 | 0.22 | 86284726 | 43612032 | tier1 | In-frame | 734 | NA | 0.39352 |
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