Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-D7-A6EZ-01A | TCGA-D7-A6EZ | TSPAN14|IFIT1 | TSPAN14 | IFIT1 | 10 | 10 | 1 | 1 | 8 | 24 | 23 | 0.56 | 82228443 | 91162038 | tier1 | 5UTR-CDS | 18789 | NA | 0 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | USP10|CDH13 | USP10 | CDH13 | 16 | 16 | 1 | 1 | 13 | 2 | 2 | 0.27 | 84733717 | 83781713 | tier1 | NA | 19303 | NA | 0 |
| STAD | TCGA-IN-A6RN-01A | TCGA-IN-A6RN | VPS8|EPHB3 | VPS8 | EPHB3 | 3 | 3 | 1 | 1 | 2 | 6 | 4 | 0.22 | 184742177 | 184293618 | tier3 | Out-of-frame | 19676 | NA | 0 |
| STAD | TCGA-VQ-A91K-01A | TCGA-VQ-A91K | VSIG1|MID2 | VSIG1 | MID2 | X | X | 1 | 1 | 2 | 28 | 26 | 0.095 | 107301431 | 107159232 | tier2 | Out-of-frame | 19688 | NA | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | WWC3|SHROOM2 | WWC3 | SHROOM2 | X | X | 1 | 1 | 10 | 5 | 5 | 0.15 | 10102636 | 9841692 | tier1 | In-frame | 19927 | NA | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | XPO4|ZDHHC20 | XPO4 | ZDHHC20 | 13 | 13 | -1 | -1 | 2 | 3 | 3 | 0.19 | 21429766 | 21987911 | tier4 | In-frame | 19962 | NA | 0 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | XYLT1|SPN | XYLT1 | SPN | 16 | 16 | -1 | 1 | 2 | 5 | 5 | 1 | 17352845 | 29675016 | tier4 | CDS-5UTR | 20010 | NA | 0 |
| STAD | TCGA-VQ-AA68-01A | TCGA-VQ-AA68 | ZDHHC20|SPATA13 | ZDHHC20 | SPATA13 | 13 | 13 | -1 | 1 | 2 | 9 | 8 | 0.16 | 21987791 | 24796957 | tier2 | CDS-5UTR | 20219 | NA | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | ZFAND3|MDGA1 | ZFAND3 | MDGA1 | 6 | 6 | 1 | -1 | 5 | 6 | 6 | 0.37 | 38084515 | 37631882 | tier1 | In-frame | 20243 | NA | 0 |
| STAD | TCGA-BR-7716-01A | TCGA-BR-7716 | ZMYND11|PCDH15 | ZMYND11 | PCDH15 | 10 | 10 | 1 | -1 | 4 | 35 | 30 | 0.12 | 226068 | 55849823 | tier1 | 5UTR-CDS | 20339 | NA | 0 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | ZNF416|C19orf18 | ZNF416 | C19orf18 | 19 | 19 | -1 | -1 | 4 | 73 | 68 | 100 | 58089425 | 58478000 | tier1 | Out-of-frame | 20489 | NA | 0 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | ZNF507|LPHN1 | ZNF507 | LPHN1 | 19 | 19 | 1 | -1 | 2 | 5 | 4 | 7.5 | 32851524 | 14294509 | tier2 | CDS-5UTR | 20532 | NA | 0 |
| STAD | TCGA-VQ-A92D-01A | TCGA-VQ-A92D | ZNF638|ANTXR1 | ZNF638 | ANTXR1 | 2 | 2 | 1 | 1 | 2 | 13 | 11 | 1.4 | 71645769 | 69472357 | tier2 | Out-of-frame | 20599 | NA | 0 |
| STAD | TCGA-BR-4255-01A | TCGA-BR-4255 | ZZZ3|CDH1 | ZZZ3 | CDH1 | 1 | 16 | -1 | 1 | 4 | 37 | 36 | 0.22 | 78148947 | 68835573 | tier1 | 5UTR-CDS | 20727 | NA | 0 |
| TGCT | TCGA-2G-AAGP-01A | TCGA-2G-AAGP | ANO1|CDC42BPG | ANO1 | CDC42BPG | 11 | 11 | 1 | -1 | 6 | 1 | 1 | 0.28 | 69951894 | 64606374 | tier4 | In-frame | 1019 | NA | 0.3714 |
| TGCT | TCGA-2G-AAGG-01A | TCGA-2G-AAGG | ATP2B1|YAF2 | ATP2B1 | YAF2 | 12 | 12 | -1 | -1 | 17 | 18 | 18 | 0.29 | 90021455 | 42593037 | tier1 | In-frame | 1722 | NA | 0.37597 |
| TGCT | TCGA-2G-AAF6-01A | TCGA-2G-AAF6 | C7orf10|RALA | C7orf10 | RALA | 7 | 7 | 1 | 1 | 3 | 9 | 9 | 2.1 | 40174719 | 39726230 | tier1 | CDS-5UTR | 2779 | NA | 0 |
| TGCT | TCGA-2G-AAGA-01A | TCGA-2G-AAGA | EDC3|SLC6A11 | EDC3 | SLC6A11 | 15 | 3 | -1 | 1 | 17 | 20 | 18 | 0.18 | 74948074 | 10967690 | tier1 | In-frame | 5268 | NA | 0.35347 |
| TGCT | TCGA-SB-A76C-01A | TCGA-SB-A76C | FCHSD2|GLYAT | FCHSD2 | GLYAT | 11 | 11 | -1 | -1 | 17 | 14 | 13 | 0.023 | 72712035 | 58491984 | tier2 | CDS-5UTR | 6399 | NA | 0.36907 |
| TGCT | TCGA-2G-AAF6-01A | TCGA-2G-AAF6 | GIT2|SLC2A13 | GIT2 | SLC2A13 | 12 | 12 | -1 | -1 | 3 | 4 | 4 | 1.4 | 110426768 | 40345167 | tier1 | Out-of-frame | 7075 | NA | 0.37717 |
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