Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 302 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | SNX9|ZDHHC14 | SNX9 | ZDHHC14 | 6 | 6 | 1 | 1 | 8 | 18 | 14 | 3.9 | 158318030 | 158014020 | tier1 | In-frame | 16569 | NA | 0 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | SON|IL10RB | SON | IL10RB | 21 | 21 | 1 | 1 | 4 | 40 | 37 | 2.1 | 34932081 | 34668489 | tier1 | In-frame | 16588 | NA | 0 |
| STAD | TCGA-VQ-A925-01A | TCGA-VQ-A925 | SSH2|SLC6A4 | SSH2 | SLC6A4 | 17 | 17 | -1 | -1 | 9 | 30 | 16 | 2.1 | 28120912 | 28549933 | tier1 | CDS-5UTR | 16914 | NA | 0 |
| STAD | TCGA-VQ-A91S-01A | TCGA-VQ-A91S | STARD3|JUP | STARD3 | JUP | 17 | 17 | 1 | -1 | 41 | 1255 | 1118 | 0.029 | 37793484 | 39928114 | tier1 | 5UTR-5UTR | 17008 | NA | 0 |
| STAD | TCGA-VQ-A928-01A | TCGA-VQ-A928 | STK24|SLC15A1 | STK24 | SLC15A1 | 13 | 13 | -1 | -1 | 2 | 13 | 12 | 0.35 | 99228999 | 99379113 | tier4 | Out-of-frame | 17069 | NA | 0 |
| STAD | TCGA-RD-A8MW-01A | TCGA-RD-A8MW | SULF2|DEXI | SULF2 | DEXI | 20 | 16 | -1 | -1 | 7 | 128 | 110 | 0.078 | 46414087 | 11023416 | tier1 | NA | 17176 | NA | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | TAF13|SORT1 | TAF13 | SORT1 | 1 | 1 | -1 | -1 | 7 | 15 | 14 | 2.4 | 109618543 | 109867711 | tier1 | Out-of-frame | 17316 | NA | 0 |
| STAD | TCGA-BR-4366-01A | TCGA-BR-4366 | TARBP1|CACHD1 | TARBP1 | CACHD1 | 1 | 1 | -1 | 1 | 4 | 8 | 8 | 0.08 | 234593413 | 65047839 | tier1 | In-frame | 17416 | NA | 0 |
| STAD | TCGA-RD-A8MW-01A | TCGA-RD-A8MW | TBC1D8|RNF149 | TBC1D8 | RNF149 | 2 | 2 | -1 | -1 | 2 | 7 | 7 | 4 | 101675883 | 101902639 | tier4 | Out-of-frame | 17504 | NA | 0 |
| STAD | TCGA-CG-4304-01A | TCGA-CG-4304 | TCF12|RGMA | TCF12 | RGMA | 15 | 15 | 1 | -1 | 9 | 4 | 3 | 0.2 | 57384089 | 93595737 | tier2 | In-frame | 17585 | NA | 0 |
| STAD | TCGA-BR-8485-01A | TCGA-BR-8485 | TEAD4|CD82 | TEAD4 | CD82 | 12 | 11 | 1 | 1 | 2 | 4 | 4 | 0.48 | 3069206 | 44609025 | tier3 | 5UTR-5UTR | 17640 | NA | 0 |
| STAD | TCGA-CG-4444-01A | TCGA-CG-4444 | THSD4|ADAM10 | THSD4 | ADAM10 | 15 | 15 | 1 | -1 | 6 | 9 | 8 | 0.039 | 71549054 | 58957396 | tier1 | In-frame | 17797 | NA | 0 |
| STAD | TCGA-CD-8527-01A | TCGA-CD-8527 | TMEM123|MMP20 | TMEM123 | MMP20 | 11 | 11 | -1 | -1 | 24 | 410 | 366 | 0.87 | 102319543 | 102449873 | tier1 | Out-of-frame | 17951 | NA | 0 |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | TMEM132B|PPAPDC1A | TMEM132B | PPAPDC1A | 12 | 10 | 1 | 1 | 2 | 10 | 10 | 2.1 | 126068540 | 122263330 | tier4 | Out-of-frame | 17961 | NA | 0 |
| STAD | TCGA-VQ-A8PU-01A | TCGA-VQ-A8PU | TMEM179B|RSF1 | TMEM179B | RSF1 | 11 | 11 | 1 | -1 | 3 | 39 | 29 | 0.35 | 62554999 | 77413540 | tier1 | Out-of-frame | 17991 | NA | 0 |
| STAD | TCGA-VQ-A925-01A | TCGA-VQ-A925 | TMEM182|IL18R1 | TMEM182 | IL18R1 | 2 | 2 | 1 | 1 | 2 | 10 | 8 | 0.49 | 103380886 | 102979093 | tier2 | CDS-5UTR | 17997 | NA | 0 |
| STAD | TCGA-BR-4366-01A | TCGA-BR-4366 | TMEM63B|RSPH9 | TMEM63B | RSPH9 | 6 | 6 | 1 | 1 | 4 | 5 | 5 | 0.087 | 44104176 | 43623299 | tier1 | In-frame | 18045 | NA | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | TMEM87B|IL1RN | TMEM87B | IL1RN | 2 | 2 | 1 | 1 | 6 | 4 | 4 | 0.1 | 112847295 | 113868693 | tier2 | CDS-5UTR | 18055 | NA | 0 |
| STAD | TCGA-VQ-A8DZ-01A | TCGA-VQ-A8DZ | TMPRSS2|SETD4 | TMPRSS2 | SETD4 | 21 | 21 | -1 | -1 | 2 | 8 | 5 | 0.49 | 42860321 | 37429502 | tier2 | In-frame | 18285 | NA | 0 |
| STAD | TCGA-BR-7716-01A | TCGA-BR-7716 | TOMM20|EPHB2 | TOMM20 | EPHB2 | 1 | 1 | -1 | 1 | 3 | 138 | 125 | 0.046 | 235291910 | 23208852 | tier1 | In-frame | 18434 | NA | 0 |
|
Showing page 302 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.