Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | RTN3|SLC22A9 | RTN3 | SLC22A9 | 11 | 11 | 1 | 1 | 6 | 16 | 14 | 0.12 | 63449250 | 63175584 | tier1 | In-frame | 15169 | NA | 0 |
| STAD | TCGA-CG-4443-01A | TCGA-CG-4443 | SAMHD1|HCK | SAMHD1 | HCK | 20 | 20 | -1 | 1 | 3 | 4 | 4 | 1.3 | 35563432 | 30659465 | tier1 | CDS-5UTR | 15301 | non-validated | 0 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | SBNO2|C19orf26 | SBNO2 | C19orf26 | 19 | 19 | -1 | -1 | 2 | 14 | 12 | 0.003 | 1174171 | 1236120 | tier3 | 5UTR-5UTR | 15345 | NA | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | SCLY|RAMP1 | SCLY | RAMP1 | 2 | 2 | 1 | 1 | 6 | 5 | 5 | 0.29 | 238978118 | 238820170 | tier1 | Out-of-frame | 15410 | NA | 0 |
| STAD | TCGA-HF-A5NB-01A | TCGA-HF-A5NB | SDC1|PUM2 | SDC1 | PUM2 | 2 | 2 | -1 | -1 | 3 | 46 | 46 | 2.5 | 20402848 | 20463221 | tier1 | In-frame | 15461 | NA | 0 |
| STAD | TCGA-HU-A4HD-01A | TCGA-HU-A4HD | SDC4|TP53TG5 | SDC4 | TP53TG5 | 20 | 20 | -1 | -1 | 16 | 192 | 170 | 1.2 | 43976965 | 44006253 | tier1 | In-frame | 15471 | NA | 0 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | SEC14L1|MGAT5B | SEC14L1 | MGAT5B | 17 | 17 | 1 | 1 | 9 | 13 | 11 | 0.84 | 75139741 | 74921048 | tier1 | Out-of-frame | 15492 | NA | 0 |
| STAD | TCGA-VQ-A925-01A | TCGA-VQ-A925 | SEL1L3|CCKAR | SEL1L3 | CCKAR | 4 | 4 | -1 | -1 | 2 | 55 | 53 | 0.023 | 25759156 | 26484905 | tier2 | Out-of-frame | 15539 | NA | 0 |
| STAD | TCGA-D7-A4YU-01A | TCGA-D7-A4YU | SEMA3B|ALS2CR12 | SEMA3B | ALS2CR12 | 3 | 2 | 1 | -1 | 4 | 22 | 21 | 2.5 | 50308911 | 202154508 | tier1 | Out-of-frame | 15541 | NA | 0 |
| STAD | TCGA-VQ-AA6D-01A | TCGA-VQ-AA6D | SEMA4B|CIB2 | SEMA4B | CIB2 | 15 | 15 | 1 | -1 | 21 | 343 | 287 | 0.062 | 90728313 | 78403618 | tier1 | 5UTR-CDS | 15554 | NA | 0 |
| STAD | TCGA-BR-7901-01A | TCGA-BR-7901 | SEMA4B|ZNF710 | SEMA4B | ZNF710 | 15 | 15 | 1 | 1 | 4 | 6 | 6 | 0.18 | 90728313 | 90622892 | tier1 | 5UTR-CDS | 15558 | NA | 0 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | SHB|LYN | SHB | LYN | 9 | 8 | -1 | 1 | 2 | 36 | 35 | 1 | 37974619 | 56854414 | tier3 | CDS-5UTR | 15872 | NA | 0 |
| STAD | TCGA-BR-8590-01A | TCGA-BR-8590 | SLC12A2|MEGF10 | SLC12A2 | MEGF10 | 5 | 5 | 1 | 1 | 14 | 46 | 45 | 1.9 | 127487088 | 126790258 | tier1 | In-frame | 16010 | NA | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | SLC12A7|TERT | SLC12A7 | TERT | 5 | 5 | -1 | -1 | 238 | 230 | 201 | 0.76 | 1074682 | 1266650 | tier1 | In-frame | 16016 | NA | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | SLC22A23|C6orf145 | SLC22A23 | C6orf145 | 6 | 6 | -1 | -1 | 5 | 5 | 5 | 1.8 | 3410422 | 3738382 | tier1 | In-frame | 16064 | NA | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | SLC39A14|PIWIL2 | SLC39A14 | PIWIL2 | 8 | 8 | 1 | 1 | 6 | 3 | 3 | 0.24 | 22224921 | 22136854 | tier1 | 5UTR-5UTR | 16202 | NA | 0 |
| STAD | TCGA-KB-A93J-01A | TCGA-KB-A93J | SLC4A4|EPB41L1 | SLC4A4 | EPB41L1 | 4 | 20 | 1 | 1 | 5 | 12 | 10 | 0.66 | 72053118 | 34761686 | tier1 | 5UTR-5UTR | 16273 | NA | 0 |
| STAD | TCGA-BR-8382-01A | TCGA-BR-8382 | SLC5A1|YWHAH | SLC5A1 | YWHAH | 22 | 22 | 1 | 1 | 2 | 9 | 9 | 0.34 | 32500878 | 32352126 | tier2 | Out-of-frame | 16279 | NA | 0 |
| STAD | TCGA-VQ-AA6D-01A | TCGA-VQ-AA6D | SLC5A1|YWHAH | SLC5A1 | YWHAH | 22 | 22 | 1 | 1 | 2 | 30 | 26 | 0.34 | 32446001 | 32352126 | tier2 | In-frame | 16280 | NA | 0 |
| STAD | TCGA-CD-A486-01A | TCGA-CD-A486 | SMAD3|IL17RA | SMAD3 | IL17RA | 15 | 22 | 1 | 1 | 2 | 23 | 22 | 1.9 | 67358698 | 17577952 | tier2 | Out-of-frame | 16343 | NA | 0 |
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