Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-BR-8485-01A | TCGA-BR-8485 | PNPLA2|EPS8L2 | PNPLA2 | EPS8L2 | 11 | 11 | 1 | 1 | 7 | 38 | 36 | 0.081 | 822606 | 720062 | tier1 | In-frame | 13121 | NA | 0.36775 |
| STAD | TCGA-VQ-A91Y-01A | TCGA-VQ-A91Y | PPFIA1|ANO1 | PPFIA1 | ANO1 | 11 | 11 | 1 | 1 | 3 | 28 | 24 | 0.9 | 70118542 | 70016993 | tier1 | Out-of-frame | 13244 | NA | 0.36547 |
| STAD | TCGA-VQ-AA6G-01A | TCGA-VQ-AA6G | PPFIA1|ANO1 | PPFIA1 | ANO1 | 11 | 11 | 1 | 1 | 30 | 209 | 122 | 0.9 | 70118542 | 70007267 | tier1 | In-frame | 13245 | NA | 0.36547 |
| STAD | TCGA-HU-A4GC-01A | TCGA-HU-A4GC | PPFIBP1|ADIPOR2 | PPFIBP1 | ADIPOR2 | 12 | 12 | 1 | 1 | 3 | 6 | 6 | 0.87 | 27731172 | 1882008 | tier1 | 5UTR-CDS | 13279 | NA | 0.36341 |
| STAD | TCGA-BR-8687-01A | TCGA-BR-8687 | PPM1B|ABCG8 | PPM1B | ABCG8 | 2 | 2 | 1 | 1 | 4 | 20 | 20 | 1.3 | 44396413 | 44102285 | tier4 | 5UTR-CDS | 13305 | NA | 0.37124 |
| STAD | TCGA-CD-A489-01A | TCGA-CD-A489 | PPP1CB|PLB1 | PPP1CB | PLB1 | 2 | 2 | 1 | 1 | 2 | 7 | 6 | 0.89 | 29006844 | 28820872 | tier2 | Out-of-frame | 13342 | NA | 0.37643 |
| STAD | TCGA-BR-4366-01A | TCGA-BR-4366 | PQLC1|PARD6G | PQLC1 | PARD6G | 18 | 18 | -1 | -1 | 9 | 4 | 4 | 0.1 | 77703329 | 77960815 | tier1 | Out-of-frame | 13482 | NA | 0.37382 |
| STAD | TCGA-VQ-A925-01A | TCGA-VQ-A925 | PRKCA|CEP112 | PRKCA | CEP112 | 17 | 17 | 1 | -1 | 2 | 12 | 11 | 0.2 | 64492401 | 63848152 | tier2 | In-frame | 13539 | NA | 0.38129 |
| STAD | TCGA-CG-4443-01A | TCGA-CG-4443 | PTK2|DENND3 | PTK2 | DENND3 | 8 | 8 | -1 | 1 | 9 | 2 | 2 | 0.08 | 142011224 | 142146608 | tier1 | 5UTR-CDS | 13777 | non-validated | 0.38962 |
| STAD | TCGA-CG-4475-01A | TCGA-CG-4475 | PTPN4|AC069154.2 | PTPN4 | AC069154.2 | 2 | 2 | 1 | 1 | 4 | 1 | 1 | 0.35 | 120517960 | 120395835 | tier2 | 5UTR-CDS | 13835 | NA | 0.36509 |
| STAD | TCGA-BR-8690-01A | TCGA-BR-8690 | PTPRH|PPP6R1 | PTPRH | PPP6R1 | 19 | 19 | -1 | -1 | 4 | 11 | 9 | 0.012 | 55711604 | 55748338 | tier1 | Out-of-frame | 13867 | validated | 0.36625 |
| STAD | TCGA-VQ-AA68-01A | TCGA-VQ-AA68 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 30 | 229 | 211 | 0.049 | 128841404 | 127469793 | tier1 | In-frame | 13894 | NA | 0 |
| STAD | TCGA-D7-8579-01A | TCGA-D7-8579 | PTPRN2|IMMP2L | PTPRN2 | IMMP2L | 7 | 7 | -1 | -1 | 2 | 21 | 19 | 0.89 | 158380250 | 111161505 | tier3 | CDS-5UTR | 13904 | NA | 0 |
| STAD | TCGA-D7-8576-01A | TCGA-D7-8576 | PTPRZ1|MDFIC | PTPRZ1 | MDFIC | 7 | 7 | 1 | 1 | 2 | 4 | 2 | 0.38 | 121608184 | 114582330 | tier2 | In-frame | 13927 | NA | 0 |
| STAD | TCGA-CG-4438-01A | TCGA-CG-4438 | RACGAP1|LIMA1 | RACGAP1 | LIMA1 | 12 | 12 | -1 | -1 | 28 | 49 | 48 | 0.13 | 50410414 | 50594667 | tier1 | Out-of-frame | 14154 | NA | 0 |
| STAD | TCGA-FP-A8CX-01A | TCGA-FP-A8CX | RAVER1|C19orf6 | RAVER1 | C19orf6 | 19 | 19 | -1 | -1 | 2 | 38 | 32 | 0.028 | 10439318 | 1014472 | tier3 | In-frame | 14395 | NA | 0 |
| STAD | TCGA-HU-A4H5-01A | TCGA-HU-A4H5 | RFWD2|LRRC52 | RFWD2 | LRRC52 | 1 | 1 | -1 | 1 | 5 | 12 | 9 | 1.8 | 176132005 | 165532742 | tier1 | Out-of-frame | 14601 | NA | 0 |
| STAD | TCGA-BR-A4J1-01A | TCGA-BR-A4J1 | RPS19|CEACAM3 | RPS19 | CEACAM3 | 19 | 19 | 1 | 1 | 226 | 7464 | 6641 | 0.53 | 42365281 | 42314003 | tier1 | Out-of-frame | 15035 | NA | 0 |
| STAD | TCGA-CD-8527-01A | TCGA-CD-8527 | RPS6KA3|BMX | RPS6KA3 | BMX | X | X | -1 | 1 | 5 | 13 | 10 | 0.73 | 20284682 | 15526468 | tier1 | CDS-5UTR | 15049 | NA | 0 |
| STAD | TCGA-BR-8373-01A | TCGA-BR-8373 | RTN3|SLC22A9 | RTN3 | SLC22A9 | 11 | 11 | 1 | 1 | 2 | 11 | 10 | 0.12 | 63449250 | 63173969 | tier2 | Out-of-frame | 15168 | validated | 0 |
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