Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 3 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| ACC | TCGA-OR-A5KX-01A | TCGA-OR-A5KX | PPP1R16A|GPR172A | PPP1R16A | GPR172A | 8 | 8 | 1 | 1 | 17 | 7 | 7 | 0.21 | 145715595 | 145583775 | tier1 | NA | 13376 | NA | 0.36024 |
| ACC | TCGA-OR-A5J9-01A | TCGA-OR-A5J9 | PPP2R5C|PRKD1 | PPP2R5C | PRKD1 | 14 | 14 | 1 | -1 | 14 | 2 | 2 | 0.049 | 102276373 | 30069023 | tier1 | Out-of-frame | 13412 | NA | 0.3875 |
| ACC | TCGA-OR-A5J1-01A | TCGA-OR-A5J1 | PPP6R3|LRP5 | PPP6R3 | LRP5 | 11 | 11 | 1 | 1 | 3 | 2 | 1 | 3.3 | 68228295 | 68204357 | tier3 | 5UTR-CDS | 13463 | NA | 0.36875 |
| ACC | TCGA-OR-A5KX-01A | TCGA-OR-A5KX | PRLR|CDH12 | PRLR | CDH12 | 5 | 5 | -1 | -1 | 6 | 9 | 9 | 0.14 | 35118163 | 22505473 | tier1 | 5UTR-5UTR | 13578 | NA | 0.37381 |
| ACC | TCGA-OR-A5J1-01A | TCGA-OR-A5J1 | PRLR|CLPTM1L | PRLR | CLPTM1L | 5 | 5 | -1 | -1 | 88 | 44 | 43 | 0.3 | 35230370 | 1318568 | tier1 | 5UTR-CDS | 13579 | NA | 0.3754 |
| ACC | TCGA-OR-A5J7-01A | TCGA-OR-A5J7 | PRX|BLVRB | PRX | BLVRB | 19 | 19 | -1 | -1 | 117 | 98 | 86 | 0.58 | 40904527 | 40953953 | tier1 | Out-of-frame | 13672 | NA | 0.35484 |
| ACC | TCGA-PK-A5HA-01A | TCGA-PK-A5HA | PXK|RPP14 | PXK | RPP14 | 3 | 3 | 1 | 1 | 12 | 2 | 2 | 0.34 | 58318817 | 58296234 | tier1 | Out-of-frame | 13986 | NA | 0 |
| ACC | TCGA-OR-A5JP-01A | TCGA-OR-A5JP | QSOX2|CTU2 | QSOX2 | CTU2 | 9 | 16 | -1 | 1 | 19 | 5 | 4 | 3.4 | 139137322 | 88781268 | tier1 | Out-of-frame | 14016 | NA | 0 |
| ACC | TCGA-OR-A5K5-01A | TCGA-OR-A5K5 | RAB8A|PLVAP | RAB8A | PLVAP | 19 | 19 | 1 | -1 | 29 | 18 | 17 | 0.61 | 16222835 | 17477004 | tier2 | Out-of-frame | 14128 | NA | 0 |
| ACC | TCGA-OR-A5J1-01A | TCGA-OR-A5J1 | RBM14|BBS1 | RBM14 | BBS1 | 11 | 11 | 1 | 1 | 7 | 6 | 6 | 1.2 | 66386032 | 66283011 | tier1 | 3UTR-CDS | 14444 | NA | 0 |
| ACC | TCGA-OR-A5JP-01A | TCGA-OR-A5JP | RECQL5|CACNA1G | RECQL5 | CACNA1G | 17 | 17 | -1 | 1 | 4 | 5 | 5 | 1 | 73654378 | 48667832 | tier1 | In-frame | 14529 | NA | 0 |
| ACC | TCGA-OR-A5LM-01A | TCGA-OR-A5LM | RP4-761I2.2|RCAN2 | RP4-761I2.2 | RCAN2 | 6 | 6 | 1 | -1 | 10 | 6 | 4 | 0.16 | 11094622 | 46424715 | tier1 | CDS-5UTR | 14961 | NA | 0 |
| ACC | TCGA-PK-A5HB-01A | TCGA-PK-A5HB | RRP7A|PACSIN2 | RRP7A | PACSIN2 | 22 | 22 | -1 | -1 | 79 | 42 | 36 | 0.13 | 42914011 | 43275175 | tier1 | In-frame | 15139 | NA | 0 |
| ACC | TCGA-OR-A5JB-01A | TCGA-OR-A5JB | S100A6|DDX27 | S100A6 | DDX27 | 1 | 20 | -1 | 1 | 2 | 830 | 670 | 0.018 | 153507075 | 47849303 | tier3 | NA | 15237 | NA | 0 |
| ACC | TCGA-OR-A5JP-01A | TCGA-OR-A5JP | SCAMP4|COX8A | SCAMP4 | COX8A | 19 | 11 | 1 | 1 | 210 | 114 | 100 | 0.54 | 1918989 | 63743697 | tier1 | Out-of-frame | 15376 | NA | 0 |
| ACC | TCGA-OR-A5JP-01A | TCGA-OR-A5JP | SCARB1|EEA1 | SCARB1 | EEA1 | 12 | 12 | -1 | -1 | 2 | 55 | 42 | 1.1 | 125262186 | 93229203 | tier3 | NA | 15389 | NA | 0 |
| ACC | TCGA-OR-A5JY-01A | TCGA-OR-A5JY | SCARB1|EIF3D | SCARB1 | EIF3D | 12 | 22 | -1 | -1 | 3 | 1 | 1 | 2.9 | 125262179 | 36922952 | tier3 | NA | 15390 | NA | 0 |
| ACC | TCGA-OR-A5JM-01A | TCGA-OR-A5JM | SCARB2|SGMS1 | SCARB2 | SGMS1 | 4 | 10 | -1 | -1 | 8 | 7 | 6 | 0.64 | 77134580 | 52104105 | tier1 | CDS-5UTR | 15394 | NA | 0 |
| ACC | TCGA-OR-A5JE-01A | TCGA-OR-A5JE | SLC12A4|DPEP2 | SLC12A4 | DPEP2 | 16 | 16 | -1 | -1 | 11 | 2 | 2 | 1.3 | 67991645 | 68033651 | tier1 | CDS-5UTR | 16011 | NA | 0 |
| ACC | TCGA-OR-A5KT-01A | TCGA-OR-A5KT | SLC16A7|RP11-762I7.5 | SLC16A7 | RP11-762I7.5 | 12 | 12 | 1 | -1 | 10 | 11 | 10 | 3.5 | 59990017 | 56154424 | tier1 | NA | 16039 | NA | 0 |
|
Showing page 3 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.