Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-VQ-AA6D-01A | TCGA-VQ-AA6D | NCOA6|GGT7 | NCOA6 | GGT7 | 20 | 20 | -1 | -1 | 2 | 58 | 49 | 0.25 | 33413275 | 33440341 | tier2 | 5UTR-CDS | 11220 | NA | 0.36719 |
| STAD | TCGA-CD-A4MH-01A | TCGA-CD-A4MH | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 14 | 114 | 102 | 0.08 | 125020111 | 125302253 | tier1 | 5UTR-CDS | 11257 | NA | 0.37966 |
| STAD | TCGA-VQ-A91Y-01A | TCGA-VQ-A91Y | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 5 | 142 | 130 | 0.08 | 124979693 | 125302253 | tier1 | In-frame | 11263 | NA | 0.37966 |
| STAD | TCGA-VQ-A8DZ-01A | TCGA-VQ-A8DZ | NIPAL2|RGS22 | NIPAL2 | RGS22 | 8 | 8 | -1 | -1 | 3 | 16 | 15 | 0.005 | 99306231 | 100977658 | tier1 | In-frame | 11546 | NA | 0.32999 |
| STAD | TCGA-BR-8678-01A | TCGA-BR-8678 | NKD1|ADCY7 | NKD1 | ADCY7 | 16 | 16 | 1 | 1 | 43 | 109 | 98 | 1 | 50583466 | 50321823 | tier1 | CDS-5UTR | 11585 | NA | 0.35411 |
| STAD | TCGA-BR-7959-01A | TCGA-BR-7959 | NPSR1|C7orf10 | NPSR1 | C7orf10 | 7 | 7 | 1 | 1 | 3 | 14 | 12 | 1.2 | 34698171 | 40899915 | tier1 | Out-of-frame | 11706 | NA | 0 |
| STAD | TCGA-VQ-A925-01A | TCGA-VQ-A925 | OBFC1|COL17A1 | OBFC1 | COL17A1 | 10 | 10 | -1 | -1 | 5 | 42 | 42 | 0.082 | 105648830 | 105795321 | tier1 | In-frame | 11987 | NA | 0.36241 |
| STAD | TCGA-BR-7197-01A | TCGA-BR-7197 | OLFM2|PSENEN | OLFM2 | PSENEN | 19 | 19 | -1 | 1 | 3 | 8 | 6 | 0.15 | 10046980 | 36236736 | tier1 | CDS-5UTR | 12026 | NA | 0.36334 |
| STAD | TCGA-CD-8535-01A | TCGA-CD-8535 | OSBPL5|MRGPRE | OSBPL5 | MRGPRE | 11 | 11 | -1 | -1 | 3 | 40 | 30 | 0.016 | 3140777 | 3250090 | tier1 | CDS-5UTR | 12083 | NA | 0.35273 |
| STAD | TCGA-BR-8295-01A | TCGA-BR-8295 | PACSIN2|LGALS1 | PACSIN2 | LGALS1 | 22 | 22 | -1 | 1 | 2 | 15 | 12 | 0.77 | 43272143 | 38072993 | tier3 | Out-of-frame | 12174 | NA | 0.36514 |
| STAD | TCGA-CD-8532-01A | TCGA-CD-8532 | PACSIN2|TTLL12 | PACSIN2 | TTLL12 | 22 | 22 | -1 | -1 | 2 | 5 | 4 | 1.4 | 43308027 | 43579155 | tier4 | In-frame | 12182 | NA | 0.35995 |
| STAD | TCGA-RD-A8N4-01A | TCGA-RD-A8N4 | PAK1|C11orf67 | PAK1 | C11orf67 | 11 | 11 | -1 | 1 | 5 | 17 | 14 | 0.091 | 77085373 | 77580768 | tier1 | In-frame | 12199 | NA | 0 |
| STAD | TCGA-BR-8365-01A | TCGA-BR-8365 | PARD3|COLQ | PARD3 | COLQ | 10 | 3 | -1 | -1 | 2 | 8 | 6 | 0.67 | 34759013 | 15520889 | tier3 | In-frame | 12268 | NA | 0.37761 |
| STAD | TCGA-CD-8533-01A | TCGA-CD-8533 | PARD3B|PTH2R | PARD3B | PTH2R | 2 | 2 | 1 | 1 | 2 | 2 | 2 | 0.23 | 205551005 | 209357989 | tier2 | In-frame | 12280 | NA | 0.37092 |
| STAD | TCGA-MX-A666-01A | TCGA-MX-A666 | PDCD2L|CACNA1A | PDCD2L | CACNA1A | 19 | 19 | 1 | -1 | 2 | 34 | 31 | 1.2 | 34904752 | 13482593 | tier2 | In-frame | 12450 | NA | 0.3609 |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | PILRB|AP4M1 | PILRB | AP4M1 | 7 | 7 | 1 | 1 | 10 | 50 | 49 | 0.24 | 99936512 | 99702863 | tier1 | 5UTR-CDS | 12854 | NA | 0.36136 |
| STAD | TCGA-VQ-AA6B-01A | TCGA-VQ-AA6B | PLD1|SLC7A14 | PLD1 | SLC7A14 | 3 | 3 | -1 | -1 | 4 | 129 | 118 | 0.025 | 171338176 | 170219134 | tier1 | In-frame | 12979 | NA | 0.36827 |
| STAD | TCGA-BR-7901-01A | TCGA-BR-7901 | PLEK2|TMEM229B | PLEK2 | TMEM229B | 14 | 14 | -1 | -1 | 2 | 13 | 11 | 0.22 | 67878735 | 67940658 | tier3 | CDS-5UTR | 12990 | NA | 0.344 |
| STAD | TCGA-BR-8373-01A | TCGA-BR-8373 | PLEKHH1|MPP5 | PLEKHH1 | MPP5 | 14 | 14 | 1 | 1 | 2 | 19 | 16 | 4.5 | 68008710 | 67759228 | tier2 | Out-of-frame | 13030 | validated | 0.36595 |
| STAD | TCGA-BR-8361-01A | TCGA-BR-8361 | PLXNA3|ATP6AP1 | PLXNA3 | ATP6AP1 | X | X | 1 | 1 | 4 | 22 | 21 | 0.14 | 153699981 | 153660176 | tier1 | In-frame | 13066 | NA | 0.35532 |
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