Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 298 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | KDM1A|EPHB2 | KDM1A | EPHB2 | 1 | 1 | 1 | 1 | 44 | 49 | 47 | 0.14 | 23357127 | 23208852 | tier1 | In-frame | 8624 | NA | 0.38174 |
| STAD | TCGA-BR-8590-01A | TCGA-BR-8590 | KIAA0182|CDH13 | KIAA0182 | CDH13 | 16 | 16 | 1 | 1 | 3 | 38 | 36 | 0.17 | 85647004 | 83520082 | tier1 | NA | 8740 | NA | 0.37063 |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | KIAA0195|TMEM104 | KIAA0195 | TMEM104 | 17 | 17 | 1 | 1 | 2 | 1 | 1 | 0.92 | 73482507 | 72832066 | tier4 | In-frame | 8752 | NA | 0.3319 |
| STAD | TCGA-BR-7959-01A | TCGA-BR-7959 | KIAA1033|HCAR1 | KIAA1033 | HCAR1 | 12 | 12 | 1 | -1 | 21 | 100 | 92 | 0.75 | 105536336 | 123105249 | tier1 | CDS-3UTR | 8817 | NA | 0.32741 |
| STAD | TCGA-BR-4363-01A | TCGA-BR-4363 | LRRFIP2|EPHA3 | LRRFIP2 | EPHA3 | 3 | 3 | -1 | 1 | 4 | 9 | 9 | 0.23 | 37190385 | 89521614 | tier1 | Out-of-frame | 9613 | NA | 0.38212 |
| STAD | TCGA-BR-7901-01A | TCGA-BR-7901 | LUC7L3|ABCC3 | LUC7L3 | ABCC3 | 17 | 17 | 1 | 1 | 3 | 25 | 23 | 0.031 | 48797192 | 48744915 | tier1 | In-frame | 9683 | NA | 0.34646 |
| STAD | TCGA-VQ-A92D-01A | TCGA-VQ-A92D | LUC7L3|CACNA1G | LUC7L3 | CACNA1G | 17 | 17 | 1 | 1 | 3 | 51 | 47 | 0.57 | 48819092 | 48652904 | tier1 | In-frame | 9686 | NA | 0.34458 |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | LUZP1|IL28RA | LUZP1 | IL28RA | 1 | 1 | -1 | -1 | 2 | 4 | 2 | 0.12 | 23495259 | 24496091 | tier4 | 5UTR-CDS | 9690 | NA | 0.34609 |
| STAD | TCGA-F1-A72C-01A | TCGA-F1-A72C | MACF1|FOXJ3 | MACF1 | FOXJ3 | 1 | 1 | 1 | -1 | 5 | 78 | 57 | 0.37 | 39910507 | 42664901 | tier1 | In-frame | 9728 | NA | 0.37062 |
| STAD | TCGA-BR-8590-01A | TCGA-BR-8590 | MAP4|SHISA5 | MAP4 | SHISA5 | 3 | 3 | -1 | -1 | 4 | 26 | 24 | 0.75 | 47898921 | 48538726 | tier4 | In-frame | 9896 | NA | 0.3631 |
| STAD | TCGA-BR-8486-01A | TCGA-BR-8486 | MED1|GRB7 | MED1 | GRB7 | 17 | 17 | -1 | 1 | 2 | 5 | 5 | 1.6 | 37607291 | 37898505 | tier4 | CDS-5UTR | 10153 | non-validated | 0.38309 |
| STAD | TCGA-BR-7716-01A | TCGA-BR-7716 | MET|CAV1 | MET | CAV1 | 7 | 7 | 1 | 1 | 4 | 169 | 161 | 0.18 | 116340338 | 116199000 | tier1 | In-frame | 10257 | NA | 0.38279 |
| STAD | TCGA-BR-8373-01A | TCGA-BR-8373 | MIB1|GREB1L | MIB1 | GREB1L | 18 | 18 | 1 | 1 | 4 | 24 | 24 | 2.1 | 19359646 | 19088079 | tier1 | Out-of-frame | 10331 | non-validated | 0.36617 |
| STAD | TCGA-CD-A486-01A | TCGA-CD-A486 | MINK1|SPNS3 | MINK1 | SPNS3 | 17 | 17 | 1 | 1 | 2 | 56 | 55 | 0.34 | 4736935 | 4381867 | tier4 | In-frame | 10373 | NA | 0.37201 |
| STAD | TCGA-CG-4477-01A | TCGA-CG-4477 | MLL5|PTPRZ1 | MLL5 | PTPRZ1 | 7 | 7 | 1 | 1 | 6 | 8 | 8 | 0.17 | 104654982 | 121568210 | tier4 | 5UTR-CDS | 10498 | NA | 0.37534 |
| STAD | TCGA-BR-8080-01A | TCGA-BR-8080 | MMP15|CCDC135 | MMP15 | CCDC135 | 16 | 16 | 1 | 1 | 5 | 44 | 39 | 0.011 | 58060416 | 57761211 | tier4 | In-frame | 10546 | NA | 0.35704 |
| STAD | TCGA-CD-8533-01A | TCGA-CD-8533 | MSH2|EPCAM | MSH2 | EPCAM | 2 | 2 | 1 | 1 | 10 | 48 | 43 | 0.77 | 47643568 | 47612305 | tier1 | Out-of-frame | 10698 | NA | 0.36209 |
| STAD | TCGA-BR-8687-01A | TCGA-BR-8687 | MUC13|SIAE | MUC13 | SIAE | 3 | 11 | -1 | -1 | 2 | 23 | 11 | 0.57 | 124624289 | 124543777 | tier3 | 3UTR-5UTR | 10855 | NA | 0.3528 |
| STAD | TCGA-CD-8525-01A | TCGA-CD-8525 | MYEOV|FAM38A | MYEOV | FAM38A | 11 | 16 | 1 | -1 | 2 | 3 | 3 | 0.053 | 69062043 | 88815887 | tier3 | 5UTR-CDS | 10883 | NA | 0.34019 |
| STAD | TCGA-CG-4444-01A | TCGA-CG-4444 | MYO1E|GPR176 | MYO1E | GPR176 | 15 | 15 | -1 | -1 | 47 | 65 | 58 | 0.062 | 59510090 | 40099459 | tier1 | Out-of-frame | 10983 | NA | 0.36093 |
|
Showing page 298 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.