Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 297 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-D7-8573-01A | TCGA-D7-8573 | GRB7|KRT27 | GRB7 | KRT27 | 17 | 17 | 1 | -1 | 50 | 241 | 222 | 0.003 | 37900916 | 38933984 | tier2 | In-frame | 7418 | NA | 0.38112 |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | GUCY2C|ART4 | GUCY2C | ART4 | 12 | 12 | -1 | -1 | 12 | 97 | 86 | 2.4 | 14781580 | 14982396 | tier4 | Out-of-frame | 7560 | NA | 0.36117 |
| STAD | TCGA-CD-A486-01A | TCGA-CD-A486 | HBP1|SLC26A5 | HBP1 | SLC26A5 | 7 | 7 | 1 | -1 | 2 | 63 | 57 | 0.022 | 106809630 | 103019782 | tier2 | 5UTR-CDS | 7601 | NA | 0.36621 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | HEG1|SLC12A8 | HEG1 | SLC12A8 | 3 | 3 | -1 | -1 | 3 | 2 | 2 | 0.008 | 124774419 | 124829179 | tier1 | Out-of-frame | 7687 | NA | 0.34984 |
| STAD | TCGA-HU-A4GH-01A | TCGA-HU-A4GH | HIF1A|PRKCH | HIF1A | PRKCH | 14 | 14 | 1 | 1 | 4 | 63 | 55 | 0.5 | 62162557 | 61857943 | tier1 | Out-of-frame | 7759 | NA | 0.39003 |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | HNRNPH3|SLC29A3 | HNRNPH3 | SLC29A3 | 10 | 10 | 1 | 1 | 14 | 43 | 42 | 0.65 | 70099312 | 73121711 | tier1 | Out-of-frame | 7899 | NA | 0.36667 |
| STAD | TCGA-CG-4304-01A | TCGA-CG-4304 | IFT52|HCK | IFT52 | HCK | 20 | 20 | 1 | 1 | 4 | 1 | 1 | 0.14 | 42249565 | 30671697 | tier2 | Out-of-frame | 8072 | NA | 0.38155 |
| STAD | TCGA-CD-8529-01A | TCGA-CD-8529 | IFT80|ILDR1 | IFT80 | ILDR1 | 3 | 3 | -1 | -1 | 3 | 5 | 5 | 0.41 | 160018671 | 121726008 | tier1 | In-frame | 8078 | non-validated | 0.35575 |
| STAD | TCGA-VQ-A92D-01A | TCGA-VQ-A92D | IL1RAP|TPRG1 | IL1RAP | TPRG1 | 3 | 3 | 1 | 1 | 6 | 90 | 79 | 0.93 | 190347287 | 189028175 | tier1 | Out-of-frame | 8175 | NA | 0.36971 |
| STAD | TCGA-CG-4466-01A | TCGA-CG-4466 | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 5 | 10 | 9 | 0.019 | 14160126 | 14141522 | tier1 | In-frame | 8186 | NA | 0.36098 |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | ILF3|PDE4A | ILF3 | PDE4A | 19 | 19 | 1 | 1 | 3 | 15 | 13 | 0.3 | 10765163 | 10556894 | tier1 | 5UTR-CDS | 8209 | NA | 0.37592 |
| STAD | TCGA-CD-8533-01A | TCGA-CD-8533 | INSR|S1PR2 | INSR | S1PR2 | 19 | 19 | -1 | -1 | 3 | 9 | 9 | 0.008 | 7267356 | 10335623 | tier1 | CDS-5UTR | 8258 | NA | 0.39061 |
| STAD | TCGA-VQ-A925-01A | TCGA-VQ-A925 | IP6K2|RHOA | IP6K2 | RHOA | 3 | 3 | -1 | -1 | 3 | 139 | 126 | 0.55 | 48754590 | 49413024 | tier1 | 5UTR-5UTR | 8292 | NA | 0.38645 |
| STAD | TCGA-CG-4477-01A | TCGA-CG-4477 | IQGAP1|CCDC63 | IQGAP1 | CCDC63 | 15 | 12 | 1 | 1 | 2 | 3 | 3 | 1.8 | 90931628 | 111311646 | tier3 | Out-of-frame | 8312 | NA | 0.3843 |
| STAD | TCGA-BR-8373-01A | TCGA-BR-8373 | IQGAP1|SEMA4B | IQGAP1 | SEMA4B | 15 | 15 | 1 | 1 | 3 | 25 | 25 | 0.98 | 90934105 | 90760671 | tier1 | Out-of-frame | 8318 | validated | 0.38447 |
| STAD | TCGA-CG-4442-01A | TCGA-CG-4442 | IQGAP1|SEMA4B | IQGAP1 | SEMA4B | 15 | 15 | 1 | 1 | 2 | 3 | 3 | 0.98 | 90982631 | 90760671 | tier3 | In-frame | 8319 | non-validated | 0.38447 |
| STAD | TCGA-BR-7901-01A | TCGA-BR-7901 | ITGA6|HAT1 | ITGA6 | HAT1 | 2 | 2 | 1 | 1 | 2 | 7 | 7 | 4.2 | 173292698 | 172809399 | tier4 | In-frame | 8383 | NA | 0.36894 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | ITGB5|SLC12A8 | ITGB5 | SLC12A8 | 3 | 3 | -1 | -1 | 3 | 4 | 4 | 0.16 | 124536468 | 124854626 | tier1 | Out-of-frame | 8407 | NA | 0.36989 |
| STAD | TCGA-BR-8373-01A | TCGA-BR-8373 | ITGB5|ZNF148 | ITGB5 | ZNF148 | 3 | 3 | -1 | -1 | 6 | 24 | 23 | 0.12 | 124527869 | 125032500 | tier1 | CDS-5UTR | 8408 | validated | 0.38135 |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | ITPR3|SYNGAP1 | ITPR3 | SYNGAP1 | 6 | 6 | 1 | 1 | 6 | 5 | 5 | 0.59 | 33646616 | 33391254 | tier4 | Out-of-frame | 8458 | NA | 0.38126 |
|
Showing page 297 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.